# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vi0A 206 1.72e-20 a.4.1.9,a.121.1.1 100720,100721 2pbxA 203 3.41e-20 2ibdA 204 7.34e-20 1qvtA 194 7.43e-20 a.4.1.9,a.121.1.1 104602,104603 3ccyA 203 8.39e-20 1pb6A 212 9.03e-20 a.4.1.9,a.121.1.1 88017,88018 1jt6A 188 1.11e-19 a.4.1.9,a.121.1.1 67247,67248 2hyjA 200 1.18e-19 2uxuA 210 1.34e-19 2qtqA 213 2.14e-19 1rktA 205 2.15e-19 a.4.1.9,a.121.1.1 97623,97624 3bruA 222 3.06e-19 2g7sA 194 3.07e-19 a.4.1.9,a.121.1.1 134737,134738 1t56A 216 3.24e-19 a.4.1.9,a.121.1.1 106428,106429 2f07A 197 3.79e-19 2genA 197 4.49e-19 a.4.1.9,a.121.1.1 135062,135063 2iekA 200 5.09e-19 2fq4A 192 5.67e-19 a.4.1.9,a.121.1.1 133937,133938 1z77A 200 5.98e-19 a.4.1.9,a.121.1.1 124588,124589 1ui5A 215 8.69e-19 a.4.1.9,a.121.1.1 107856,107857 2id6A 202 9.14e-19 2rasA 212 9.27e-19 3bhqA 211 9.33e-19 3crjA 199 1.14e-18 3c2bA 221 1.17e-18 1zkgA 212 1.21e-18 a.4.1.9,a.121.1.1 125194,125195 3bcgA 215 1.79e-18 2zcmA 192 2.02e-18 3cdlA 203 2.06e-18 2hytA 197 2.30e-18 2iaiA 230 2.45e-18 3cwrA 208 2.55e-18 2raeA 207 2.94e-18 2qcoA 210 3.51e-18 2dg7A 195 3.64e-18 2zb9A 214 6.44e-18 2nx4A 194 6.47e-18 2o7tA 199 6.80e-18 1sgmA 191 7.02e-18 a.4.1.9,a.121.1.1 105537,105538 2jj7A 186 7.65e-18 3cjdA 198 8.09e-18 2tct 207 1.03e-17 2qkoA 215 1.14e-17 1zk8A 183 1.26e-17 a.4.1.9,a.121.1.1 125177,125178 2i10A 202 1.32e-17 a.4.1.9,a.121.1.1 136960,136961 2gfnA 209 1.70e-17 a.4.1.9,a.121.1.1 135101,135102 2qibA 231 1.89e-17 2id3A 225 2.28e-17 a.4.1.9,a.121.1.1 137261,137262 2d6yA 202 2.82e-17 a.4.1.9,a.121.1.1 131313,131314 3b81A 203 3.16e-17 2optA 234 3.88e-17 3bqyA 209 5.07e-17 3colA 196 5.23e-17 2fbqA 235 7.21e-17 a.4.1.9,a.121.1.1 133256,133257 2np5A 203 7.43e-17 a.4.1.9,a.121.1.1 138424,138425 2g3bA 208 8.43e-17 a.4.1.9,a.121.1.1 134558,134559 2q24A 194 9.24e-17 2fx0A 201 1.02e-16 a.4.1.9,a.121.1.1 134269,134270 2rekA 199 1.11e-16 2o7oA 207 1.11e-16 a.4.1.9,a.121.1.1 138930,138931 2fd5A 180 1.42e-16 a.4.1.9,a.121.1.1 133291,133292 2hkuA 215 1.58e-16 3bjbA 207 1.63e-16 3bniA 229 1.69e-16 1a6i 217 2.25e-16 2vkeA 208 2.34e-16 2of7A 260 2.46e-16 2g7gA 213 2.55e-16 a.4.1.9,a.121.1.1 134732,134733 1z0xA 220 3.34e-16 a.4.1.9,a.121.1.1 124334,124335 2iu5A 195 4.11e-16 2vprA 207 4.40e-16 2eh3A 179 6.20e-16 2oi8A 216 7.42e-16 2oerA 214 7.65e-16 2dg8A 193 8.73e-16 2hxoA 237 1.39e-15 2yveA 185 2.04e-15 1v7bA 185 2.11e-15 a.4.1.9,a.121.1.1 119861,119862 2qwtA 196 2.22e-15 2guhA 214 2.28e-15 1t33A 224 2.01e-14 a.4.1.9,a.121.1.1 106295,106296 2g7lA 243 2.01e-13 a.4.1.9,a.121.1.1 134734,134735 1hlvA 131 0.5317 a.4.1.7,a.4.1.7 65854,65855 2jn6A 97 0.5735 2dt5A 211 1.727 a.4.5.38,c.2.1.12 131708,131709 2v9vA 135 1.732 2ev0A 142 2.015 a.4.5.24,a.76.1.1 132413,132414 2qq9A 226 2.235 1wsuA 124 2.516 a.4.5.35,a.4.5.35 121245,121246 2rn7A 108 4.159 2pg4A 95 4.730 1on2A 142 5.004 a.4.5.24,a.76.1.1 87103,87104 3ddeA 239 5.330 1xsvA 113 5.479 a.4.13.3 116003 1bl0A 129 6.800 a.4.1.8,a.4.1.8 16053,16054 1sfxA 109 7.743 a.4.5.50 105505 1xcbA 211 10.28 a.4.5.38,c.2.1.12 109552,109553 2dh2A 424 11.81 1y7yA 74 12.72 a.35.1.3 122729 2h09A 155 16.06 2ahrA 259 16.68 a.100.1.10,c.2.1.6 126775,126776 1l3lA 234 18.41 a.4.6.2,d.110.5.1 73541,73542 2o09A 189 18.53 1ny1A 240 22.95 c.6.2.3 86395 1fseA 74 23.09 a.4.6.2 60000 2ftsA 419 24.52 b.85.6.1,b.103.1.1,c.57.1.2 134079,134080,134081 1je8A 82 24.74 a.4.6.2 77108 1zy9A 564 25.47 b.30.5.11,c.1.8.13 125813,125814 1zljA 78 25.48 3b7hA 78 25.86 1zcaA 359 25.86 a.66.1.1,c.37.1.8 124897,124898 2o3fA 111 27.50 1v2aA 210 27.86 a.45.1.1,c.47.1.5 100263,100264 2b5aA 77 27.90 a.35.1.3 127882 2f4mB 61 28.32 a.189.1.1 132931 2ictA 94 30.21 1wa5B 530 30.83 a.118.1.1 114432 2d1zA 436 31.29 2qvwA 756 34.46 1utxA 66 34.76 a.35.1.3 108034 1nhyA 219 35.25 a.45.1.1,c.47.1.5 80520,80521 2dtrA 226 35.51 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2gsqA 202 35.52 a.45.1.1,c.47.1.5 17715,33009 1g7oA 215 37.00 a.45.1.1,c.47.1.5 60332,60333 1y9qA 192 37.53 a.35.1.8,b.82.1.15 116592,116593 3cmgA 667 38.22 3co4A 312 38.23 1a0cA 438 38.59 c.1.15.3 29529 1tw9A 206 38.61 a.45.1.1,c.47.1.5 107381,107382 1b0nA 111 40.09 a.34.1.1,a.35.1.3 17001,17064 3bddA 142 40.70 1s50A 259 41.70 c.94.1.1 118864 1kz7A 353 41.96 a.87.1.1,b.55.1.1 73333,73334 2d4zA 250 41.99 d.37.1.1,d.37.1.1 131260,131261 1k0dA 260 43.49 a.45.1.1,c.47.1.5 67930,67931 1a0dA 440 44.36 c.1.15.3 29533 2c71A 216 45.33 c.6.2.3 130017 2blfA 373 46.98 1jyeA 349 49.02 c.93.1.1 67455 1xo0A 324 49.17 a.60.9.1,d.163.1.1 115674,115675 1u8bA 133 49.50 2plcA 274 50.23 c.1.18.2 29614 2imsA 171 51.03 1lmb3 92 51.18 1jftA 340 51.25 a.35.1.5,c.93.1.1 66652,66653 2q8gA 407 52.96 1mkmA 249 53.85 a.4.5.33,d.110.2.2 79242,79243 1f1eA 154 54.03 a.22.1.2 64927 2rfpA 171 55.45 1tadA 324 55.64 a.66.1.1,c.37.1.8 18194,32077 1yqgA 263 56.23 2vg3A 284 58.27 1a0p 290 58.70 1lvaA 258 58.79 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 3cuoA 99 59.14 1xdyA 298 59.47 d.176.1.1 115186 2biiA 424 60.04 2ebyA 113 60.11 2iyvA 184 62.00 c.37.1.2 137812 1shuX 182 62.17 c.62.1.1 98882 1aj2 282 62.95 1vflA 356 63.34 c.1.9.1 120041 1r69A 69 63.36 a.35.1.2 17028 2o8xA 70 64.71 2r1jL 68 64.90 1yuzA 202 66.19 a.25.1.1,g.41.5.1 124077,124078 1px5A 349 66.87 a.160.1.2,d.218.1.6 95277,95278 2de3A 365 67.09 1v7pC 200 67.15 c.62.1.1 108408 2cro 71 67.84 1resA 43 67.86 a.4.1.2 16023 1mf7A 194 67.86 c.62.1.1 84937 2nszA 129 67.92 a.118.1.14 138560 1lrvA 244 68.10 a.118.1.5 19146 1adrA 76 69.92 a.35.1.2 17042 1rzsA 61 73.27 a.35.1.2 105139 3cbuA 214 73.28 2qw5A 335 74.13 1r69 69 74.27 2on5A 206 74.50 1u55A 188 75.02 d.278.1.1 107677 1bqcA 302 75.30 c.1.8.3 28831 1jlvA 209 76.60 a.45.1.1,c.47.1.5 71729,71730 1ua4A 455 76.60 c.72.1.3 99128 2qwwA 154 76.77 1a0pA 290 76.94 a.60.9.1,d.163.1.1 18105,42165 1js1X 324 77.26 c.78.1.1,c.78.1.1 71834,71835 2vosA 487 77.57 2pl2A 217 77.62 1ns5A 155 77.93 c.116.1.3 80705 1lrv 244 78.19 1k2xA 177 78.38 d.153.1.5 90929 1gqnA 252 78.49 c.1.10.1 90514 1m48A 133 78.52 a.26.1.2 74443 2yxoA 267 81.97 1z9hA 290 82.11 a.45.1.1,c.47.1.5 124758,124759 3cs1A 219 82.58 1k1xA 659 82.80 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 1x9fB 145 83.08 a.1.1.2 114984 2pzzA 147 83.43 2auwA 170 83.71 a.35.1.10,d.331.1.1 127339,127340 1dlyA 164 85.70 a.1.1.1 14983 1aisB 200 85.73 a.74.1.2,a.74.1.2 18384,18385 2izzA 322 86.97 2v1xA 591 88.88