# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vi0A 206 3.17e-22 a.4.1.9,a.121.1.1 100720,100721 2pbxA 203 5.17e-22 1jt6A 188 1.35e-21 a.4.1.9,a.121.1.1 67247,67248 2uxuA 210 1.41e-21 1qvtA 194 1.66e-21 a.4.1.9,a.121.1.1 104602,104603 2ibdA 204 1.82e-21 3ccyA 203 1.84e-21 1pb6A 212 2.05e-21 a.4.1.9,a.121.1.1 88017,88018 2hyjA 200 2.71e-21 1rktA 205 4.30e-21 a.4.1.9,a.121.1.1 97623,97624 1t56A 216 5.21e-21 a.4.1.9,a.121.1.1 106428,106429 2genA 197 6.50e-21 a.4.1.9,a.121.1.1 135062,135063 2f07A 197 7.57e-21 2g7sA 194 8.86e-21 a.4.1.9,a.121.1.1 134737,134738 2qtqA 213 1.25e-20 3bruA 222 1.25e-20 2fq4A 192 1.38e-20 a.4.1.9,a.121.1.1 133937,133938 3cjdA 198 1.44e-20 2rasA 212 1.58e-20 3bcgA 215 1.68e-20 1z77A 200 2.32e-20 a.4.1.9,a.121.1.1 124588,124589 3bhqA 211 2.60e-20 3c2bA 221 2.62e-20 3cdlA 203 2.71e-20 1zkgA 212 3.45e-20 a.4.1.9,a.121.1.1 125194,125195 1ui5A 215 3.89e-20 a.4.1.9,a.121.1.1 107856,107857 2iekA 200 3.93e-20 2raeA 207 4.45e-20 2nx4A 194 4.49e-20 3crjA 199 4.52e-20 2qcoA 210 5.44e-20 2id6A 202 5.68e-20 2dg7A 195 6.38e-20 2zcmA 192 8.52e-20 2zb9A 214 9.19e-20 3cwrA 208 1.01e-19 2iaiA 230 1.09e-19 2hytA 197 1.09e-19 2o7tA 199 1.44e-19 2qkoA 215 1.51e-19 2gfnA 209 1.67e-19 a.4.1.9,a.121.1.1 135101,135102 1sgmA 191 2.43e-19 a.4.1.9,a.121.1.1 105537,105538 2i10A 202 4.66e-19 a.4.1.9,a.121.1.1 136960,136961 2id3A 225 5.93e-19 a.4.1.9,a.121.1.1 137261,137262 1zk8A 183 7.84e-19 a.4.1.9,a.121.1.1 125177,125178 2jj7A 186 7.90e-19 2tct 207 9.20e-19 3b81A 203 9.90e-19 2fbqA 235 1.06e-18 a.4.1.9,a.121.1.1 133256,133257 2d6yA 202 1.07e-18 a.4.1.9,a.121.1.1 131313,131314 2qibA 231 1.17e-18 2np5A 203 1.40e-18 a.4.1.9,a.121.1.1 138424,138425 2g3bA 208 2.38e-18 a.4.1.9,a.121.1.1 134558,134559 3bqyA 209 2.85e-18 3colA 196 2.97e-18 2optA 234 3.35e-18 2of7A 260 3.36e-18 2o7oA 207 3.41e-18 a.4.1.9,a.121.1.1 138930,138931 2fd5A 180 5.86e-18 a.4.1.9,a.121.1.1 133291,133292 3bjbA 207 6.47e-18 2iu5A 195 6.96e-18 1a6i 217 7.28e-18 2rekA 199 7.89e-18 2q24A 194 9.06e-18 2hkuA 215 1.00e-17 3bniA 229 1.03e-17 2fx0A 201 1.07e-17 a.4.1.9,a.121.1.1 134269,134270 2oerA 214 1.56e-17 2g7gA 213 2.33e-17 a.4.1.9,a.121.1.1 134732,134733 2vkeA 208 2.46e-17 2vprA 207 2.99e-17 1z0xA 220 3.24e-17 a.4.1.9,a.121.1.1 124334,124335 2oi8A 216 3.44e-17 2dg8A 193 5.40e-17 2guhA 214 6.26e-17 2eh3A 179 7.82e-17 2qwtA 196 8.38e-17 2hxoA 237 1.13e-16 1v7bA 185 1.35e-16 a.4.1.9,a.121.1.1 119861,119862 2yveA 185 1.87e-16 1t33A 224 2.83e-15 a.4.1.9,a.121.1.1 106295,106296 2g7lA 243 1.15e-14 a.4.1.9,a.121.1.1 134734,134735 1bl0A 129 1.171 a.4.1.8,a.4.1.8 16053,16054 2jn6A 97 1.223 1hlvA 131 1.579 a.4.1.7,a.4.1.7 65854,65855 2v9vA 135 2.015 2ev0A 142 2.042 a.4.5.24,a.76.1.1 132413,132414 2rn7A 108 2.389 1wsuA 124 2.832 a.4.5.35,a.4.5.35 121245,121246 2qq9A 226 3.019 1zy9A 564 4.315 b.30.5.11,c.1.8.13 125813,125814 2dt5A 211 4.813 a.4.5.38,c.2.1.12 131708,131709 1on2A 142 5.388 a.4.5.24,a.76.1.1 87103,87104 2pzzA 147 5.642 1sfxA 109 9.166 a.4.5.50 105505 2gsqA 202 10.00 a.45.1.1,c.47.1.5 17715,33009 3co4A 312 12.26 1n3yA 198 12.62 c.62.1.1 79976 2pg4A 95 13.09 1js1X 324 13.25 c.78.1.1,c.78.1.1 71834,71835 1mf7A 194 15.84 c.62.1.1 84937 1xcbA 211 16.72 a.4.5.38,c.2.1.12 109552,109553 2qvwA 756 17.02 2ahrA 259 18.40 a.100.1.10,c.2.1.6 126775,126776 1xsvA 113 19.07 a.4.13.3 116003 1ny1A 240 19.68 c.6.2.3 86395 1kz7A 353 22.53 a.87.1.1,b.55.1.1 73333,73334 2rfpA 171 23.78 2d4zA 250 25.82 d.37.1.1,d.37.1.1 131260,131261 2ftsA 419 26.12 b.85.6.1,b.103.1.1,c.57.1.2 134079,134080,134081 1x9fB 145 29.87 a.1.1.2 114984 1atzA 189 29.92 c.62.1.1 34132 1s50A 259 30.64 c.94.1.1 118864 1jftA 340 31.18 a.35.1.5,c.93.1.1 66652,66653 2h09A 155 31.35 1tu7A 208 32.43 a.45.1.1,c.47.1.5 112653,112654 2o09A 189 32.56 1resA 43 35.25 a.4.1.2 16023 2c1iA 431 35.90 c.6.2.3,d.341.1.1 129636,129637 1shuX 182 35.92 c.62.1.1 98882 2dh2A 424 37.51 1zljA 78 38.44 1z9hA 290 38.97 a.45.1.1,c.47.1.5 124758,124759 1fseA 74 39.26 a.4.6.2 60000 1je8A 82 40.55 a.4.6.2 77108 2pbyA 308 40.69 2vosA 487 41.53 2dtrA 226 41.99 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1tqjA 230 43.00 c.1.2.2 107228 2fliA 220 43.32 c.1.2.2 133714 2blfA 373 44.11 2r4vA 247 44.91 1nhyA 219 46.46 a.45.1.1,c.47.1.5 80520,80521 1l3lA 234 46.91 a.4.6.2,d.110.5.1 73541,73542 2owrA 218 48.60 1ijbA 202 49.03 c.62.1.1 71229 1oe8A 211 50.28 a.45.1.1,c.47.1.5 86905,86906 2v1xA 591 50.80 1m48A 133 51.21 a.26.1.2 74443 1zcaA 359 52.60 a.66.1.1,c.37.1.8 124897,124898 1lrvA 244 55.28 a.118.1.5 19146 2zfoC 147 57.82 1px5A 349 57.85 a.160.1.2,d.218.1.6 95277,95278 2a2rA 210 58.51 a.45.1.1,c.47.1.5 126058,126059 1y7yA 74 59.83 a.35.1.3 122729 1n9bA 265 60.86 e.3.1.1 85463 2pbqA 178 61.24 1ds1A 324 61.36 b.82.2.2 28127 3d1uA 288 61.81 1ji6A 589 63.43 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 2f4mB 61 64.13 a.189.1.1 132931 2rdxA 379 66.58 1qv1A 195 67.82 a.39.1.5 96347 2ifuA 307 69.26 1v7pC 200 72.08 c.62.1.1 108408 1y9qA 192 72.54 a.35.1.8,b.82.1.15 116592,116593 2ekcA 262 73.16 1wd6A 123 73.75 d.58.4.12 114525 2r8wA 332 75.07 2exrA 524 75.52 2g3mA 693 75.62 2hnlA 225 78.31 1z5hA 780 78.75 3cucA 291 79.11 1tkkA 366 79.83 c.1.11.2,d.54.1.1 107089,107090 2vg3A 284 80.61 2biiA 424 80.95 1xo0A 324 81.69 a.60.9.1,d.163.1.1 115674,115675 1vhuA 211 83.54 c.50.1.2 100703 1ouvA 273 84.71 a.118.18.1 93570 1lrv 244 84.79 1munA 225 85.57 a.96.1.2 18744 1h4pA 408 85.72 c.1.8.3 90617 2r2dA 276 85.94 1jkoC 52 86.15 a.4.1.2 66809 1d5yA 292 87.97 a.4.1.8,a.4.1.8,d.60.1.2 16055,16056,39532 1vflA 356 88.32 c.1.9.1 120041 1yrrA 382 88.50 b.92.1.5,c.1.9.10 123935,123936 2d2mC 147 88.84