# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vi0A 206 5.05e-22 a.4.1.9,a.121.1.1 100720,100721 2pbxA 203 6.23e-22 2uxuA 210 1.22e-21 1jt6A 188 1.29e-21 a.4.1.9,a.121.1.1 67247,67248 1qvtA 194 1.42e-21 a.4.1.9,a.121.1.1 104602,104603 2ibdA 204 1.55e-21 3ccyA 203 1.89e-21 1pb6A 212 1.96e-21 a.4.1.9,a.121.1.1 88017,88018 2hyjA 200 2.54e-21 1rktA 205 3.11e-21 a.4.1.9,a.121.1.1 97623,97624 2f07A 197 5.74e-21 2genA 197 6.44e-21 a.4.1.9,a.121.1.1 135062,135063 2qtqA 213 7.76e-21 2g7sA 194 8.14e-21 a.4.1.9,a.121.1.1 134737,134738 1t56A 216 8.58e-21 a.4.1.9,a.121.1.1 106428,106429 3bruA 222 9.46e-21 3c2bA 221 1.54e-20 2fq4A 192 1.87e-20 a.4.1.9,a.121.1.1 133937,133938 1z77A 200 1.89e-20 a.4.1.9,a.121.1.1 124588,124589 2rasA 212 2.04e-20 3bcgA 215 2.12e-20 3cjdA 198 2.26e-20 3cdlA 203 2.38e-20 1zkgA 212 2.50e-20 a.4.1.9,a.121.1.1 125194,125195 1ui5A 215 2.71e-20 a.4.1.9,a.121.1.1 107856,107857 3bhqA 211 2.73e-20 2iekA 200 3.35e-20 3crjA 199 3.54e-20 2zb9A 214 4.72e-20 2raeA 207 4.89e-20 2qcoA 210 4.92e-20 2nx4A 194 5.05e-20 2id6A 202 5.50e-20 2zcmA 192 6.50e-20 2hytA 197 8.93e-20 2iaiA 230 9.84e-20 2gfnA 209 1.00e-19 a.4.1.9,a.121.1.1 135101,135102 3cwrA 208 1.02e-19 1sgmA 191 2.15e-19 a.4.1.9,a.121.1.1 105537,105538 2dg7A 195 2.36e-19 2o7tA 199 2.62e-19 2qkoA 215 2.92e-19 2id3A 225 3.36e-19 a.4.1.9,a.121.1.1 137261,137262 2i10A 202 3.97e-19 a.4.1.9,a.121.1.1 136960,136961 3b81A 203 4.46e-19 2jj7A 186 4.89e-19 2d6yA 202 6.98e-19 a.4.1.9,a.121.1.1 131313,131314 1zk8A 183 8.80e-19 a.4.1.9,a.121.1.1 125177,125178 2tct 207 9.75e-19 2g3bA 208 1.36e-18 a.4.1.9,a.121.1.1 134558,134559 2qibA 231 1.40e-18 2np5A 203 1.49e-18 a.4.1.9,a.121.1.1 138424,138425 3bqyA 209 1.49e-18 2fbqA 235 1.95e-18 a.4.1.9,a.121.1.1 133256,133257 2optA 234 2.70e-18 3colA 196 3.37e-18 2o7oA 207 4.73e-18 a.4.1.9,a.121.1.1 138930,138931 2fx0A 201 4.76e-18 a.4.1.9,a.121.1.1 134269,134270 2rekA 199 4.93e-18 2q24A 194 5.08e-18 2hkuA 215 5.99e-18 3bjbA 207 6.13e-18 2of7A 260 6.25e-18 2fd5A 180 6.46e-18 a.4.1.9,a.121.1.1 133291,133292 3bniA 229 6.99e-18 1a6i 217 8.64e-18 2iu5A 195 1.06e-17 2g7gA 213 1.93e-17 a.4.1.9,a.121.1.1 134732,134733 2oerA 214 1.93e-17 2oi8A 216 1.94e-17 2vkeA 208 1.95e-17 2vprA 207 2.13e-17 1z0xA 220 2.39e-17 a.4.1.9,a.121.1.1 124334,124335 2dg8A 193 4.51e-17 2qwtA 196 4.81e-17 2eh3A 179 6.79e-17 2hxoA 237 1.11e-16 2guhA 214 1.22e-16 1v7bA 185 1.90e-16 a.4.1.9,a.121.1.1 119861,119862 2yveA 185 1.94e-16 1t33A 224 1.26e-15 a.4.1.9,a.121.1.1 106295,106296 2g7lA 243 1.10e-14 a.4.1.9,a.121.1.1 134734,134735 2jn6A 97 0.4665 1hlvA 131 0.4711 a.4.1.7,a.4.1.7 65854,65855 2ev0A 142 1.068 a.4.5.24,a.76.1.1 132413,132414 1wsuA 124 1.072 a.4.5.35,a.4.5.35 121245,121246 2dt5A 211 1.223 a.4.5.38,c.2.1.12 131708,131709 2rn7A 108 1.284 2v9vA 135 1.714 1bl0A 129 1.735 a.4.1.8,a.4.1.8 16053,16054 2qq9A 226 3.099 1on2A 142 3.657 a.4.5.24,a.76.1.1 87103,87104 1xcbA 211 3.848 a.4.5.38,c.2.1.12 109552,109553 2pg4A 95 4.163 2ahrA 259 5.695 a.100.1.10,c.2.1.6 126775,126776 1xsvA 113 6.569 a.4.13.3 116003 1sfxA 109 6.940 a.4.5.50 105505 2gsqA 202 8.034 a.45.1.1,c.47.1.5 17715,33009 1kz7A 353 8.677 a.87.1.1,b.55.1.1 73333,73334 1zljA 78 11.08 1je8A 82 12.79 a.4.6.2 77108 1fseA 74 13.06 a.4.6.2 60000 1xdyA 298 14.70 d.176.1.1 115186 1l3lA 234 14.73 a.4.6.2,d.110.5.1 73541,73542 2zfoC 147 15.30 2blfA 373 15.48 1y9qA 192 15.77 a.35.1.8,b.82.1.15 116592,116593 1y7yA 74 16.11 a.35.1.3 122729 2ftsA 419 18.34 b.85.6.1,b.103.1.1,c.57.1.2 134079,134080,134081 2h09A 155 20.82 2o09A 189 20.93 1lrvA 244 21.75 a.118.1.5 19146 1tu7A 208 22.51 a.45.1.1,c.47.1.5 112653,112654 2ifuA 307 24.16 1b0nA 111 25.07 a.34.1.1,a.35.1.3 17001,17064 2graA 277 27.05 1a0pA 290 27.10 a.60.9.1,d.163.1.1 18105,42165 2ictA 94 28.21 1lmb3 92 28.77 2a2rA 210 28.86 a.45.1.1,c.47.1.5 126058,126059 1zcaA 359 29.27 a.66.1.1,c.37.1.8 124897,124898 2vg3A 284 29.47 1resA 43 30.27 a.4.1.2 16023 2rfpA 171 31.88 1utxA 66 32.03 a.35.1.3 108034 1x9fB 145 32.86 a.1.1.2 114984 1zy9A 564 32.90 b.30.5.11,c.1.8.13 125813,125814 2b5aA 77 32.97 a.35.1.3 127882 1lrv 244 33.07 1xo0A 324 33.44 a.60.9.1,d.163.1.1 115674,115675 1u8bA 133 34.33 1lbkA 208 34.59 a.45.1.1,c.47.1.5 73809,73810 1z5hA 780 35.31 1jkoC 52 35.55 a.4.1.2 66809 1yuzA 202 35.73 a.25.1.1,g.41.5.1 124077,124078 3co4A 312 37.52 2j07A 420 37.56 a.99.1.1,c.28.1.1 137891,137892 3ddeA 239 38.38 3b7hA 78 39.04 2d4zA 250 41.31 d.37.1.1,d.37.1.1 131260,131261 2izzA 322 42.03 1a0p 290 42.37 1yqgA 263 42.39 2biiA 424 44.06 2nszA 129 44.28 a.118.1.14 138560 3cloA 258 45.40 1ypxA 375 45.49 2hnlA 225 46.06 1ji6A 589 47.01 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 2dh2A 424 48.20 1oe8A 211 49.05 a.45.1.1,c.47.1.5 86905,86906 1js3A 486 51.40 c.67.1.6 67215 1jftA 340 51.56 a.35.1.5,c.93.1.1 66652,66653 1sedA 117 51.92 a.219.1.1 105449 2qwwA 154 53.15 2bnmA 198 53.23 a.35.1.3,b.82.1.10 128835,128836 1rzsA 61 53.26 a.35.1.2 105139 1tw3A 360 55.75 a.4.5.29,c.66.1.12 107373,107374 2d2mC 147 56.11 1px5A 349 56.83 a.160.1.2,d.218.1.6 95277,95278 3cuoA 99 58.19 2rcyA 262 58.65 2ondA 308 59.53 1bw0A 416 60.21 c.67.1.1 34385 2dtrA 226 62.53 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1tadA 324 65.31 a.66.1.1,c.37.1.8 18194,32077 1pgtA 210 65.61 a.45.1.1,c.47.1.5 17515,32809 2o3fA 111 66.82 2ebyA 113 66.94 1mkmA 249 67.03 a.4.5.33,d.110.2.2 79242,79243 2qvwA 756 67.58 1js1X 324 68.68 c.78.1.1,c.78.1.1 71834,71835 1ouvA 273 69.11 a.118.18.1 93570 1d5yA 292 69.88 a.4.1.8,a.4.1.8,d.60.1.2 16055,16056,39532 1g7oA 215 70.97 a.45.1.1,c.47.1.5 60332,60333 1s3jA 155 71.69 a.4.5.28 98437 2rdxA 379 71.69 2z0xA 158 71.74 1m48A 133 72.28 a.26.1.2 74443 1h4pA 408 72.55 c.1.8.3 90617 2cro 71 75.69 1wa5B 530 75.76 a.118.1.1 114432 1adrA 76 75.89 a.35.1.2 17042 1s69A 124 76.14 a.1.1.1 105305 1z9hA 290 76.85 a.45.1.1,c.47.1.5 124758,124759 2nyxA 168 78.49 1munA 225 79.29 a.96.1.2 18744 3cucA 291 79.39 1xqrA 296 79.88 a.118.1.21 122241 2d1zA 436 80.28 2jmlA 81 81.84 2ieeA 271 82.55 2d1hA 109 83.20 a.4.5.50 131125 1ny1A 240 85.54 c.6.2.3 86395 1oktA 211 85.89 a.45.1.1,c.47.1.5 93272,93273 1jyeA 349 85.91 c.93.1.1 67455 2dri 271 86.05 2ia2A 265 86.08 1u55A 188 86.11 d.278.1.1 107677 2r1jL 68 86.18 2vosA 487 86.81 2cx5A 158 87.30 1k3yA 221 87.49 a.45.1.1,c.47.1.5 77245,77246 1a9xB 379 88.14 c.8.3.1,c.23.16.1 30732,31409 2eq8C 40 89.57 1k1xA 659 89.63 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281