# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbxA 203 7.70e-22 1vi0A 206 1.02e-21 a.4.1.9,a.121.1.1 100720,100721 1jt6A 188 2.12e-21 a.4.1.9,a.121.1.1 67247,67248 1qvtA 194 2.46e-21 a.4.1.9,a.121.1.1 104602,104603 2uxuA 210 2.70e-21 2ibdA 204 2.96e-21 2hyjA 200 4.19e-21 1pb6A 212 5.16e-21 a.4.1.9,a.121.1.1 88017,88018 3ccyA 203 5.60e-21 1rktA 205 7.05e-21 a.4.1.9,a.121.1.1 97623,97624 2f07A 197 1.01e-20 2qtqA 213 1.03e-20 2genA 197 1.06e-20 a.4.1.9,a.121.1.1 135062,135063 2g7sA 194 1.28e-20 a.4.1.9,a.121.1.1 134737,134738 1t56A 216 1.30e-20 a.4.1.9,a.121.1.1 106428,106429 3bruA 222 1.30e-20 2fq4A 192 3.22e-20 a.4.1.9,a.121.1.1 133937,133938 3c2bA 221 3.73e-20 2rasA 212 4.12e-20 1zkgA 212 4.28e-20 a.4.1.9,a.121.1.1 125194,125195 3bhqA 211 4.44e-20 1z77A 200 4.50e-20 a.4.1.9,a.121.1.1 124588,124589 3cjdA 198 4.69e-20 2iekA 200 4.78e-20 3bcgA 215 5.08e-20 1ui5A 215 5.65e-20 a.4.1.9,a.121.1.1 107856,107857 3cdlA 203 5.85e-20 3crjA 199 5.93e-20 2id6A 202 7.83e-20 2raeA 207 8.34e-20 2nx4A 194 9.36e-20 2zcmA 192 1.05e-19 2zb9A 214 1.45e-19 2hytA 197 1.78e-19 2dg7A 195 2.37e-19 2gfnA 209 2.42e-19 a.4.1.9,a.121.1.1 135101,135102 2o7tA 199 2.55e-19 3cwrA 208 2.66e-19 2iaiA 230 2.66e-19 2qcoA 210 2.96e-19 1sgmA 191 4.11e-19 a.4.1.9,a.121.1.1 105537,105538 2qkoA 215 4.85e-19 2i10A 202 6.08e-19 a.4.1.9,a.121.1.1 136960,136961 2id3A 225 8.43e-19 a.4.1.9,a.121.1.1 137261,137262 3b81A 203 9.48e-19 2jj7A 186 9.75e-19 1zk8A 183 9.87e-19 a.4.1.9,a.121.1.1 125177,125178 2qibA 231 1.10e-18 2tct 207 1.20e-18 2np5A 203 1.61e-18 a.4.1.9,a.121.1.1 138424,138425 2g3bA 208 1.63e-18 a.4.1.9,a.121.1.1 134558,134559 2d6yA 202 1.80e-18 a.4.1.9,a.121.1.1 131313,131314 2fbqA 235 2.86e-18 a.4.1.9,a.121.1.1 133256,133257 2optA 234 3.72e-18 2o7oA 207 4.18e-18 a.4.1.9,a.121.1.1 138930,138931 3colA 196 4.84e-18 3bqyA 209 5.25e-18 3bniA 229 7.19e-18 2of7A 260 7.60e-18 2rekA 199 7.70e-18 3bjbA 207 8.26e-18 1a6i 217 8.35e-18 2fd5A 180 8.60e-18 a.4.1.9,a.121.1.1 133291,133292 2q24A 194 8.82e-18 2hkuA 215 9.55e-18 2iu5A 195 1.02e-17 2fx0A 201 1.10e-17 a.4.1.9,a.121.1.1 134269,134270 2vkeA 208 1.63e-17 2g7gA 213 1.88e-17 a.4.1.9,a.121.1.1 134732,134733 2oerA 214 2.05e-17 1z0xA 220 2.46e-17 a.4.1.9,a.121.1.1 124334,124335 2oi8A 216 3.09e-17 2vprA 207 4.03e-17 2dg8A 193 4.77e-17 2eh3A 179 8.74e-17 2qwtA 196 9.43e-17 2guhA 214 1.30e-16 1v7bA 185 1.67e-16 a.4.1.9,a.121.1.1 119861,119862 2yveA 185 1.68e-16 2hxoA 237 2.23e-16 1t33A 224 1.81e-15 a.4.1.9,a.121.1.1 106295,106296 2g7lA 243 9.90e-15 a.4.1.9,a.121.1.1 134734,134735 2jn6A 97 0.2806 1hlvA 131 0.4458 a.4.1.7,a.4.1.7 65854,65855 2ev0A 142 0.8595 a.4.5.24,a.76.1.1 132413,132414 2dt5A 211 0.9253 a.4.5.38,c.2.1.12 131708,131709 2rn7A 108 1.168 1wsuA 124 1.205 a.4.5.35,a.4.5.35 121245,121246 2v9vA 135 1.312 2qq9A 226 1.418 1bl0A 129 1.794 a.4.1.8,a.4.1.8 16053,16054 1xcbA 211 3.213 a.4.5.38,c.2.1.12 109552,109553 2pg4A 95 3.485 1sfxA 109 3.525 a.4.5.50 105505 1xsvA 113 3.887 a.4.13.3 116003 1on2A 142 4.444 a.4.5.24,a.76.1.1 87103,87104 2ahrA 259 8.098 a.100.1.10,c.2.1.6 126775,126776 1zy9A 564 9.751 b.30.5.11,c.1.8.13 125813,125814 1zljA 78 10.45 2zfoC 147 10.84 1y9qA 192 11.09 a.35.1.8,b.82.1.15 116592,116593 1y7yA 74 11.34 a.35.1.3 122729 1fseA 74 11.36 a.4.6.2 60000 1resA 43 11.43 a.4.1.2 16023 1je8A 82 11.62 a.4.6.2 77108 1l3lA 234 12.80 a.4.6.2,d.110.5.1 73541,73542 2gsqA 202 16.38 a.45.1.1,c.47.1.5 17715,33009 1x9fB 145 18.84 a.1.1.2 114984 1kz7A 353 19.32 a.87.1.1,b.55.1.1 73333,73334 1b0nA 111 20.31 a.34.1.1,a.35.1.3 17001,17064 2h09A 155 20.62 1z5hA 780 20.69 2o8xA 70 25.25 2ictA 94 26.55 1jkoC 52 28.01 a.4.1.2 66809 1tu7A 208 28.19 a.45.1.1,c.47.1.5 112653,112654 1u8bA 133 28.44 1lrvA 244 29.11 a.118.1.5 19146 2ftsA 419 29.70 b.85.6.1,b.103.1.1,c.57.1.2 134079,134080,134081 1rzsA 61 30.65 a.35.1.2 105139 3b7hA 78 31.24 1utxA 66 31.38 a.35.1.3 108034 1a0pA 290 32.36 a.60.9.1,d.163.1.1 18105,42165 2ondA 308 32.50 2dtrA 226 34.36 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2graA 277 34.50 2b5aA 77 35.66 a.35.1.3 127882 2qwwA 154 35.70 1m48A 133 36.06 a.26.1.2 74443 3cloA 258 37.67 1adrA 76 38.04 a.35.1.2 17042 1zcaA 359 38.25 a.66.1.1,c.37.1.8 124897,124898 2blfA 373 38.38 2ebyA 113 38.59 2o09A 189 38.75 3cuoA 99 39.64 1yqgA 263 40.07 2nz8B 313 40.50 a.87.1.1,b.55.1.1 138838,138839 3co4A 312 42.51 1jlvA 209 42.60 a.45.1.1,c.47.1.5 71729,71730 2ifuA 307 43.02 2btzA 394 43.90 1xo0A 324 43.98 a.60.9.1,d.163.1.1 115674,115675 1lmb3 92 43.98 1wd6A 123 44.33 d.58.4.12 114525 2izzA 322 44.73 1s69A 124 45.20 a.1.1.1 105305 1a0p 290 45.88 1lrv 244 46.22 1s3jA 155 46.22 a.4.5.28 98437 1nhyA 219 47.14 a.45.1.1,c.47.1.5 80520,80521 1x9fA 151 47.41 a.1.1.2 114983 1mkmA 249 47.95 a.4.5.33,d.110.2.2 79242,79243 2bnmA 198 48.41 a.35.1.3,b.82.1.10 128835,128836 1jftA 340 48.58 a.35.1.5,c.93.1.1 66652,66653 1wa5B 530 49.24 a.118.1.1 114432 2r1jL 68 49.65 2a2rA 210 50.80 a.45.1.1,c.47.1.5 126058,126059 1munA 225 51.34 a.96.1.2 18744 2vg3A 284 54.05 2o3fA 111 55.39 2dh2A 424 56.61 2ia2A 265 58.60 2d4zA 250 59.07 d.37.1.1,d.37.1.1 131260,131261 3ddeA 239 59.08 1n3yA 198 59.60 c.62.1.1 79976 2cro 71 61.16 1ntyA 311 61.51 a.87.1.1,b.55.1.1 103873,103874 1neqA 74 62.59 a.35.1.2 17063 1oe8A 211 62.86 a.45.1.1,c.47.1.5 86905,86906 1xdyA 298 63.95 d.176.1.1 115186 2g7uA 257 65.43 2rfpA 171 66.23 1js3A 486 66.65 c.67.1.6 67215 2nyxA 168 66.84 2f4mB 61 68.10 a.189.1.1 132931 1r69A 69 68.49 a.35.1.2 17028 1yuzA 202 68.73 a.25.1.1,g.41.5.1 124077,124078 2zfoA 140 68.87 1r69 69 69.07 1k1xA 659 69.22 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 1px5A 349 69.66 a.160.1.2,d.218.1.6 95277,95278 1lucA 355 70.34 c.1.16.1 29547 1lbkA 208 70.78 a.45.1.1,c.47.1.5 73809,73810 2rcyA 262 71.35 2d1hA 109 72.04 a.4.5.50 131125 1tadA 324 74.20 a.66.1.1,c.37.1.8 18194,32077 2jmlA 81 74.50 2ieeA 271 75.11 2v1xA 591 75.45 1jyeA 349 75.61 c.93.1.1 67455 2de3A 365 75.86 2c1mA 424 76.04 2a61A 145 77.73 a.4.5.28 126187 2cx5A 158 77.75 1z9hA 290 78.97 a.45.1.1,c.47.1.5 124758,124759 3cucA 291 79.09 1mf7A 194 80.44 c.62.1.1 84937 2z0xA 158 81.21 1ypxA 375 81.67 3d1uA 288 82.82 1g7oA 215 82.91 a.45.1.1,c.47.1.5 60332,60333 2ofyA 86 85.21 1sedA 117 85.69 a.219.1.1 105449 2d1zA 436 88.63 3cecA 104 88.66 1k2xA 177 88.68 d.153.1.5 90929 2fnaA 357 89.54 a.4.5.11,c.37.1.20 133809,133810