# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vi0A 206 1.09e-20 a.4.1.9,a.121.1.1 100720,100721 2uxuA 210 1.80e-20 2hyjA 200 4.05e-20 2pbxA 203 4.44e-20 1pb6A 212 5.16e-20 a.4.1.9,a.121.1.1 88017,88018 1qvtA 194 7.24e-20 a.4.1.9,a.121.1.1 104602,104603 2ibdA 204 1.04e-19 1jt6A 188 1.17e-19 a.4.1.9,a.121.1.1 67247,67248 2f07A 197 1.20e-19 3bcgA 215 1.21e-19 3ccyA 203 1.27e-19 1t56A 216 1.34e-19 a.4.1.9,a.121.1.1 106428,106429 2genA 197 1.39e-19 a.4.1.9,a.121.1.1 135062,135063 2g7sA 194 1.78e-19 a.4.1.9,a.121.1.1 134737,134738 2fq4A 192 2.31e-19 a.4.1.9,a.121.1.1 133937,133938 2qtqA 213 2.48e-19 3bruA 222 2.61e-19 1rktA 205 4.03e-19 a.4.1.9,a.121.1.1 97623,97624 3bhqA 211 5.24e-19 3crjA 199 5.71e-19 3cdlA 203 5.74e-19 1z77A 200 8.88e-19 a.4.1.9,a.121.1.1 124588,124589 2raeA 207 9.47e-19 1ui5A 215 1.20e-18 a.4.1.9,a.121.1.1 107856,107857 2rasA 212 1.38e-18 2nx4A 194 1.44e-18 2iaiA 230 1.50e-18 3c2bA 221 1.50e-18 2dg7A 195 1.58e-18 3cjdA 198 1.60e-18 2gfnA 209 1.88e-18 a.4.1.9,a.121.1.1 135101,135102 2id6A 202 2.04e-18 2iekA 200 2.49e-18 1zkgA 212 2.81e-18 a.4.1.9,a.121.1.1 125194,125195 2qcoA 210 3.14e-18 3cwrA 208 3.54e-18 2id3A 225 3.59e-18 a.4.1.9,a.121.1.1 137261,137262 2hytA 197 4.54e-18 2zb9A 214 7.73e-18 1sgmA 191 8.03e-18 a.4.1.9,a.121.1.1 105537,105538 2jj7A 186 9.67e-18 2np5A 203 1.32e-17 a.4.1.9,a.121.1.1 138424,138425 2i10A 202 1.52e-17 a.4.1.9,a.121.1.1 136960,136961 3b81A 203 1.75e-17 2o7tA 199 2.29e-17 2of7A 260 3.11e-17 2fbqA 235 3.11e-17 a.4.1.9,a.121.1.1 133256,133257 3colA 196 3.33e-17 2qkoA 215 4.56e-17 1zk8A 183 5.47e-17 a.4.1.9,a.121.1.1 125177,125178 2qibA 231 5.59e-17 2d6yA 202 7.59e-17 a.4.1.9,a.121.1.1 131313,131314 2fx0A 201 8.06e-17 a.4.1.9,a.121.1.1 134269,134270 2g3bA 208 8.17e-17 a.4.1.9,a.121.1.1 134558,134559 2zcmA 192 9.88e-17 3bqyA 209 1.16e-16 2fd5A 180 1.54e-16 a.4.1.9,a.121.1.1 133291,133292 1a6i 217 2.01e-16 2tct 207 2.36e-16 2q24A 194 2.41e-16 2hkuA 215 2.98e-16 2o7oA 207 3.49e-16 a.4.1.9,a.121.1.1 138930,138931 2vprA 207 4.78e-16 2qwtA 196 5.00e-16 2optA 234 5.87e-16 3bjbA 207 6.28e-16 2oerA 214 7.31e-16 2rekA 199 7.41e-16 3bniA 229 7.48e-16 1z0xA 220 1.58e-15 a.4.1.9,a.121.1.1 124334,124335 2guhA 214 1.91e-15 2iu5A 195 2.42e-15 2oi8A 216 5.39e-15 2eh3A 179 5.48e-15 2vkeA 208 5.76e-15 2hxoA 237 5.99e-15 2g7gA 213 9.49e-15 a.4.1.9,a.121.1.1 134732,134733 2dg8A 193 1.12e-14 1t33A 224 1.58e-14 a.4.1.9,a.121.1.1 106295,106296 1v7bA 185 3.62e-14 a.4.1.9,a.121.1.1 119861,119862 2yveA 185 5.08e-14 2g7lA 243 5.51e-13 a.4.1.9,a.121.1.1 134734,134735 1ji6A 589 2.799 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 1tu7A 208 9.147 a.45.1.1,c.47.1.5 112653,112654 1bupA 386 10.11 c.55.1.1,c.55.1.1 33377,33378 2v9vA 135 11.49 1ciyA 590 12.51 b.18.1.3,b.77.2.1,f.1.3.1 23720,27977,43392 1jlvA 209 14.12 a.45.1.1,c.47.1.5 71729,71730 2imhA 231 14.18 2ifuA 307 14.81 1i5pA 633 15.96 b.18.1.3,b.77.2.1,f.1.3.1 61817,61818,61819 2gsqA 202 17.40 a.45.1.1,c.47.1.5 17715,33009 2gsoA 393 18.03 2d93A 134 20.39 1lbkA 208 22.52 a.45.1.1,c.47.1.5 73809,73810 1rh9A 373 23.93 c.1.8.3 118773 1pgtA 210 24.10 a.45.1.1,c.47.1.5 17515,32809 1ohuA 175 24.59 f.1.4.1 93029 2imiA 221 26.39 1vf1A 229 30.10 2d1zA 436 30.16 1odzA 386 30.46 c.1.8.3 86889 2a2rA 210 31.32 a.45.1.1,c.47.1.5 126058,126059 1qnrA 344 31.71 c.1.8.3 28834 2nugA 221 31.75 2jn6A 97 33.86 2pzzA 147 34.43 1m6yA 301 39.37 a.60.13.1,c.66.1.23 78716,78717 2qkmB 266 39.77 2qq9A 226 42.99 2o09A 189 43.06 1uuqA 440 44.22 c.1.8.3 100015 2qxlA 658 44.64 1j1jA 240 44.86 a.118.16.1 90762 1m0uA 249 45.72 a.45.1.1,c.47.1.5 78359,78360 2qvwA 756 46.90 1lrvA 244 47.87 a.118.1.5 19146 1hn0A 1021 49.63 a.102.3.2,b.18.1.17,b.24.1.1,b.30.5.2 83616,83617,83618,83619 1z9hA 290 49.88 a.45.1.1,c.47.1.5 124758,124759 17gsA 210 50.23 a.45.1.1,c.47.1.5 17524,32818 2pmbA 462 51.74 2g4rA 160 51.77 2aqjA 538 52.99 1bl0A 129 54.19 a.4.1.8,a.4.1.8 16053,16054 2c3nA 247 55.81 2rn7A 108 57.04 2ez6A 221 59.08 a.149.1.1,d.50.1.1 132616,132617 1v2aA 210 60.50 a.45.1.1,c.47.1.5 100263,100264 1ydeA 270 61.30 c.2.1.2 122980 2pbqA 178 63.03 2cvdA 198 63.86 a.45.1.1,c.47.1.5 130861,130862 1uyrA 737 65.32 c.14.1.4,c.14.1.4 100188,100189 1mkzA 172 66.63 c.57.1.1 84998 1y5eA 169 66.82 c.57.1.1 122632 1tw9A 206 67.71 a.45.1.1,c.47.1.5 107381,107382 2fnoA 248 68.14 a.45.1.1,c.47.1.5 133821,133822 2gn4A 344 69.14 1dkiA 371 70.17 d.3.1.1 37090 3cbuA 214 72.20 2cw8A 537 73.89 1k3yA 221 74.66 a.45.1.1,c.47.1.5 77245,77246 1dgwA 178 74.98 b.82.1.2 28090 1ag9A 175 75.64 c.23.5.1 31178 2hfsA 332 76.43 1vflA 356 76.99 c.1.9.1 120041 1tadA 324 78.88 a.66.1.1,c.37.1.8 18194,32077 3ci6A 171 79.56 2a2jA 246 81.66 b.45.1.1 126033 1giqA 413 82.39 d.166.1.1,d.166.1.1 76224,76225 2napA 723 82.74 b.52.2.2,c.81.1.1 26926,35334 2ieeA 271 83.21 1sfxA 109 85.47 a.4.5.50 105505 2r4vA 247 86.45 1rhs 296 86.74 2h6bA 250 86.92 1zcaA 359 87.56 a.66.1.1,c.37.1.8 124897,124898 1lkoA 191 87.71 a.25.1.1,g.41.5.1 78063,78064 2avnA 260 88.00 c.66.1.41 127380