# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vi0A 206 1.12e-21 a.4.1.9,a.121.1.1 100720,100721 2pbxA 203 4.40e-21 2uxuA 210 4.82e-21 1qvtA 194 7.00e-21 a.4.1.9,a.121.1.1 104602,104603 1jt6A 188 7.10e-21 a.4.1.9,a.121.1.1 67247,67248 1pb6A 212 7.67e-21 a.4.1.9,a.121.1.1 88017,88018 3ccyA 203 8.46e-21 2ibdA 204 1.05e-20 2hyjA 200 1.16e-20 2f07A 197 1.76e-20 1t56A 216 1.97e-20 a.4.1.9,a.121.1.1 106428,106429 2g7sA 194 2.00e-20 a.4.1.9,a.121.1.1 134737,134738 2genA 197 2.40e-20 a.4.1.9,a.121.1.1 135062,135063 3bcgA 215 3.50e-20 2qtqA 213 3.59e-20 3bruA 222 3.71e-20 1rktA 205 4.58e-20 a.4.1.9,a.121.1.1 97623,97624 3crjA 199 5.26e-20 2rasA 212 5.36e-20 3bhqA 211 5.75e-20 2raeA 207 7.49e-20 3cdlA 203 7.73e-20 2nx4A 194 8.24e-20 2dg7A 195 9.01e-20 2fq4A 192 9.91e-20 a.4.1.9,a.121.1.1 133937,133938 3cjdA 198 1.29e-19 1z77A 200 1.48e-19 a.4.1.9,a.121.1.1 124588,124589 2gfnA 209 2.07e-19 a.4.1.9,a.121.1.1 135101,135102 2iekA 200 2.09e-19 1zkgA 212 2.10e-19 a.4.1.9,a.121.1.1 125194,125195 2iaiA 230 2.22e-19 2id6A 202 2.52e-19 2qcoA 210 2.69e-19 3cwrA 208 2.83e-19 3c2bA 221 3.69e-19 1ui5A 215 5.05e-19 a.4.1.9,a.121.1.1 107856,107857 2o7tA 199 6.33e-19 2zb9A 214 7.99e-19 1sgmA 191 1.07e-18 a.4.1.9,a.121.1.1 105537,105538 2id3A 225 1.35e-18 a.4.1.9,a.121.1.1 137261,137262 2qkoA 215 1.49e-18 2jj7A 186 1.75e-18 2np5A 203 1.91e-18 a.4.1.9,a.121.1.1 138424,138425 2zcmA 192 2.01e-18 2hytA 197 2.18e-18 2d6yA 202 2.40e-18 a.4.1.9,a.121.1.1 131313,131314 2i10A 202 3.12e-18 a.4.1.9,a.121.1.1 136960,136961 2g3bA 208 3.31e-18 a.4.1.9,a.121.1.1 134558,134559 3colA 196 6.81e-18 2of7A 260 7.03e-18 3b81A 203 7.82e-18 2fd5A 180 9.86e-18 a.4.1.9,a.121.1.1 133291,133292 1zk8A 183 1.53e-17 a.4.1.9,a.121.1.1 125177,125178 2qibA 231 1.70e-17 2q24A 194 1.77e-17 2fbqA 235 1.91e-17 a.4.1.9,a.121.1.1 133256,133257 2fx0A 201 1.92e-17 a.4.1.9,a.121.1.1 134269,134270 3bniA 229 1.97e-17 3bqyA 209 2.03e-17 1a6i 217 3.79e-17 2tct 207 4.12e-17 2hkuA 215 4.33e-17 3bjbA 207 4.44e-17 2rekA 199 5.02e-17 2o7oA 207 5.53e-17 a.4.1.9,a.121.1.1 138930,138931 2qwtA 196 6.08e-17 2oerA 214 6.18e-17 2optA 234 7.15e-17 1z0xA 220 1.07e-16 a.4.1.9,a.121.1.1 124334,124335 2iu5A 195 1.18e-16 2guhA 214 1.33e-16 2oi8A 216 1.77e-16 2vprA 207 1.81e-16 2dg8A 193 4.21e-16 2eh3A 179 4.22e-16 2vkeA 208 7.23e-16 1v7bA 185 1.35e-15 a.4.1.9,a.121.1.1 119861,119862 2hxoA 237 1.48e-15 2g7gA 213 1.51e-15 a.4.1.9,a.121.1.1 134732,134733 2yveA 185 3.29e-15 1t33A 224 4.24e-15 a.4.1.9,a.121.1.1 106295,106296 2g7lA 243 4.31e-14 a.4.1.9,a.121.1.1 134734,134735 2pzzA 147 0.4702 2gsqA 202 4.511 a.45.1.1,c.47.1.5 17715,33009 2qvwA 756 4.654 1ji6A 589 4.662 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 2v9vA 135 5.550 1z9hA 290 5.961 a.45.1.1,c.47.1.5 124758,124759 1tu7A 208 7.445 a.45.1.1,c.47.1.5 112653,112654 2jn6A 97 7.746 1on2A 142 8.041 a.4.5.24,a.76.1.1 87103,87104 1jlvA 209 8.522 a.45.1.1,c.47.1.5 71729,71730 2rn7A 108 10.78 1oe8A 211 12.27 a.45.1.1,c.47.1.5 86905,86906 1bl0A 129 13.64 a.4.1.8,a.4.1.8 16053,16054 2qq9A 226 14.77 3co4A 312 16.31 1v2aA 210 20.29 a.45.1.1,c.47.1.5 100263,100264 2q4uA 272 21.31 1hlvA 131 24.66 a.4.1.7,a.4.1.7 65854,65855 1m0uA 249 25.18 a.45.1.1,c.47.1.5 78359,78360 1ohuA 175 27.43 f.1.4.1 93029 1h97A 147 28.32 a.1.1.2 60812 1k3yA 221 28.39 a.45.1.1,c.47.1.5 77245,77246 1lbkA 208 30.00 a.45.1.1,c.47.1.5 73809,73810 2ev0A 142 32.87 a.4.5.24,a.76.1.1 132413,132414 2h09A 155 35.53 1vf1A 229 36.04 1j1jA 240 37.14 a.118.16.1 90762 1r1dA 247 38.98 c.69.1.29 96813 1oc7A 364 40.60 c.6.1.1 86794 1sfxA 109 40.66 a.4.5.50 105505 2v1xA 591 41.04 2j63A 467 42.26 2pbqA 178 44.52 2pg4A 95 46.13 2qalC 232 46.86 2ifuA 307 48.19 2ondA 308 49.15 1jmkC 230 49.48 c.69.1.22 71747 1yuzA 202 49.84 a.25.1.1,g.41.5.1 124077,124078 2hnlA 225 51.50 3ch7A 266 53.16 1ji0A 240 53.41 c.37.1.12 71665 1tqjA 230 54.23 c.1.2.2 107228 1oktA 211 54.51 a.45.1.1,c.47.1.5 93272,93273 1uyrA 737 54.60 c.14.1.4,c.14.1.4 100188,100189 1i4jA 110 54.77 d.55.1.1 76734 2a2rA 210 54.83 a.45.1.1,c.47.1.5 126058,126059 2qipA 165 55.30 2rfgA 297 55.32 1h4pA 408 56.83 c.1.8.3 90617 1a0p 290 57.78 2r8wA 332 60.19 1ne7A 289 60.35 c.124.1.1 91833 2j0eA 266 62.09 1rd5A 262 63.68 c.1.2.4 111772 1iyhA 198 65.15 a.45.1.1,c.47.1.5 83790,83791 1mkzA 172 66.76 c.57.1.1 84998 1xcbA 211 66.99 a.4.5.38,c.2.1.12 109552,109553 3cs1A 219 67.12 2f4mB 61 67.44 a.189.1.1 132931 2nuwA 288 68.04 2h6bA 250 68.24 2v1fA 153 69.51 a.1.1.2 140055 1bea 127 69.55 2am1A 454 70.05 2fukA 220 71.50 2de3A 365 73.82 2imsA 171 75.42 1xr4A 509 75.59 c.124.1.2,c.124.1.2 115860,115861 1dlcA 584 75.61 b.18.1.3,b.77.2.1,f.1.3.1 23719,27976,43391 1kz7A 353 75.63 a.87.1.1,b.55.1.1 73333,73334 2owrA 218 75.67 1x91A 153 76.06 a.29.6.1 114975 1vl1A 232 76.06 c.124.1.1 108707 1y5eA 169 77.10 c.57.1.1 122632 1jftA 340 80.63 a.35.1.5,c.93.1.1 66652,66653 2cj4A 150 82.94 a.29.6.1 130518 2dt5A 211 83.99 a.4.5.38,c.2.1.12 131708,131709 2d8dA 90 84.96 a.130.1.1 131329 3cbuA 214 85.84 1ouvA 273 87.38 a.118.18.1 93570 1xkyA 301 87.62 c.1.10.1 122094 1lnsA 763 88.05 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103