# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vi0A 206 6.66e-14 a.4.1.9,a.121.1.1 100720,100721 2ibdA 204 8.67e-14 1pb6A 212 3.71e-13 a.4.1.9,a.121.1.1 88017,88018 1t56A 216 4.58e-13 a.4.1.9,a.121.1.1 106428,106429 2hyjA 200 5.73e-13 2uxuA 210 6.00e-13 2pbxA 203 6.17e-13 2qtqA 213 9.09e-13 1jt6A 188 1.30e-12 a.4.1.9,a.121.1.1 67247,67248 3bruA 222 1.43e-12 3cdlA 203 1.52e-12 2g7sA 194 1.91e-12 a.4.1.9,a.121.1.1 134737,134738 1z77A 200 1.94e-12 a.4.1.9,a.121.1.1 124588,124589 2iaiA 230 2.74e-12 2id3A 225 2.81e-12 a.4.1.9,a.121.1.1 137261,137262 1qvtA 194 3.26e-12 a.4.1.9,a.121.1.1 104602,104603 2f07A 197 3.57e-12 3crjA 199 4.68e-12 3ccyA 203 4.80e-12 2id6A 202 6.56e-12 2fq4A 192 1.18e-11 a.4.1.9,a.121.1.1 133937,133938 2iekA 200 1.22e-11 1zkgA 212 1.46e-11 a.4.1.9,a.121.1.1 125194,125195 3bhqA 211 2.42e-11 2genA 197 2.43e-11 a.4.1.9,a.121.1.1 135062,135063 3c2bA 221 3.24e-11 3bcgA 215 4.91e-11 2zb9A 214 5.72e-11 2jj7A 186 6.00e-11 2nx4A 194 7.42e-11 1rktA 205 7.44e-11 a.4.1.9,a.121.1.1 97623,97624 2g3bA 208 1.40e-10 a.4.1.9,a.121.1.1 134558,134559 3colA 196 1.74e-10 1zk8A 183 2.03e-10 a.4.1.9,a.121.1.1 125177,125178 1ui5A 215 2.18e-10 a.4.1.9,a.121.1.1 107856,107857 3cwrA 208 2.20e-10 2hkuA 215 3.26e-10 3cjdA 198 3.92e-10 2i10A 202 4.39e-10 a.4.1.9,a.121.1.1 136960,136961 2fx0A 201 5.52e-10 a.4.1.9,a.121.1.1 134269,134270 2o7tA 199 6.19e-10 2hytA 197 6.80e-10 2zcmA 192 7.42e-10 2np5A 203 7.64e-10 a.4.1.9,a.121.1.1 138424,138425 2rasA 212 8.40e-10 2qibA 231 9.21e-10 2oerA 214 1.07e-09 3b81A 203 1.32e-09 2q24A 194 1.71e-09 2eh3A 179 1.82e-09 3bjbA 207 3.14e-09 2qwtA 196 3.50e-09 3bqyA 209 3.71e-09 2fbqA 235 4.64e-09 a.4.1.9,a.121.1.1 133256,133257 2rekA 199 4.74e-09 2optA 234 4.95e-09 2dg7A 195 5.03e-09 2d6yA 202 5.42e-09 a.4.1.9,a.121.1.1 131313,131314 2o7oA 207 5.53e-09 a.4.1.9,a.121.1.1 138930,138931 1sgmA 191 6.59e-09 a.4.1.9,a.121.1.1 105537,105538 2qcoA 210 7.97e-09 2tct 207 8.80e-09 2gfnA 209 1.00e-08 a.4.1.9,a.121.1.1 135101,135102 2vkeA 208 1.20e-08 2g7gA 213 1.74e-08 a.4.1.9,a.121.1.1 134732,134733 2of7A 260 1.85e-08 2oi8A 216 1.97e-08 3bniA 229 2.04e-08 2fd5A 180 2.52e-08 a.4.1.9,a.121.1.1 133291,133292 2guhA 214 3.59e-08 2yveA 185 3.71e-08 2iu5A 195 3.74e-08 2vprA 207 4.29e-08 2g7lA 243 4.61e-08 a.4.1.9,a.121.1.1 134734,134735 1z0xA 220 5.11e-08 a.4.1.9,a.121.1.1 124334,124335 2dg8A 193 6.69e-08 2raeA 207 7.14e-08 1a6i 217 9.45e-08 1t33A 224 9.88e-08 a.4.1.9,a.121.1.1 106295,106296 1v7bA 185 1.17e-07 a.4.1.9,a.121.1.1 119861,119862 2hxoA 237 5.04e-07 2qkoA 215 8.20e-07 2ifuA 307 2.280 2d1yA 256 2.394 c.2.1.2 131151 3cnyA 301 3.106 2dknA 255 8.026 1ak2A 233 9.392 c.37.1.1,g.41.2.1 31894,45195 1aisB 200 9.544 a.74.1.2,a.74.1.2 18384,18385 1b3uA 588 9.713 a.118.1.2 19135 2e3zA 465 10.51 1l5oA 356 10.73 c.39.1.1 77711 2pljA 419 10.84 2bwjA 199 11.15 1ad1A 266 11.36 c.1.21.1 29668 1zemA 262 11.53 c.2.1.2 124984 2rjoA 332 12.09 1zd8A 227 12.95 1ea5A 537 13.68 c.69.1.1 34592 1gqnA 252 14.73 c.1.10.1 90514 1nffA 260 17.81 c.2.1.2 80457 1nqkA 381 18.29 c.1.16.4 92050 1r8sE 203 19.87 a.118.3.1 97248 1x7gA 261 20.17 c.2.1.2 114929 1v4aA 440 21.33 a.24.16.4,d.218.1.9 108350,108351 2ak3A 226 21.50 c.37.1.1,g.41.2.1 31892,45193 1wmaA 276 21.82 c.2.1.2 121042 1fmcA 255 23.12 c.2.1.2 29856 2bgkA 278 24.32 c.2.1.2 128480 2q02A 272 25.99 1x1eA 239 26.44 2jahA 247 27.56 1ja9A 274 27.80 c.2.1.2 62817 1e0tA 470 28.19 b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 2o23A 265 28.20 c.2.1.2 138884 1uluA 261 28.27 c.2.1.2 113292 1s8nA 205 28.61 c.23.1.1 105374 2pbyA 308 28.78 1x1tA 260 28.93 c.2.1.2 121597 1yb1A 272 30.37 c.2.1.2 116599 2d2mC 147 31.30 2e9lA 469 31.92 2vr4A 846 32.80 1yzfA 195 32.95 c.23.10.5 124275 1a3wA 500 34.20 b.58.1.1,c.1.12.1,c.49.1.1 27060,29288,33142 1eyeA 280 34.24 c.1.21.1 29672 3b9qA 302 34.34 1j5sA 463 34.42 c.1.9.8 71580 2nugA 221 35.59 1sh5A 245 35.64 a.40.1.1,a.40.1.1 105543,105544 2v9dA 343 35.68 2hnlA 225 37.56 1jyeA 349 37.91 c.93.1.1 67455 2a4kA 263 39.22 c.2.1.2 126156 2ejwA 332 39.85 2gsqA 202 40.97 a.45.1.1,c.47.1.5 17715,33009 1m3uA 264 41.29 c.1.12.8 84784 2je8A 848 41.71 1r1hA 696 41.82 d.92.1.4 104756 1oktA 211 41.82 a.45.1.1,c.47.1.5 93272,93273 1td6A 306 42.19 a.234.1.1 112390 1mkmA 249 42.24 a.4.5.33,d.110.2.2 79242,79243 1rlrA 761 43.05 a.98.1.1,c.7.1.2 18753,30679 1colA 204 44.22 f.1.1.1 43378 1vj1A 363 46.25 b.35.1.2,c.2.1.1 100794,100795 1b0uA 262 46.35 c.37.1.12 32370 1txuA 273 46.48 a.222.1.1 107439 2pcjA 224 47.01 2f31A 233 47.44 2rfpA 171 48.78 1n82A 331 49.17 c.1.8.3 91703 1z7lA 276 50.82 2gdrA 202 51.54 2vgbA 528 51.97 1vbuA 328 52.14 c.1.8.3 119963 3czdA 315 53.64 1kagA 173 54.50 c.37.1.2 72249 2cdnA 201 54.65 c.37.1.1 130289 1zejA 293 54.70 2hq1A 247 55.37 1yt3A 375 55.38 a.60.8.3,a.60.8.3,c.55.3.5 123992,123993,123994 3ctpA 330 55.53 1px5A 349 56.40 a.160.1.2,d.218.1.6 95277,95278 1wcgA 464 56.52 c.1.8.4 120888 1e4iA 447 56.54 c.1.8.4 59225 2hi4A 495 57.33 1kdoA 227 57.56 c.37.1.1 68478 1dkmA 410 57.90 c.60.1.2 34000 1wekA 217 58.17 c.129.1.1 114553 1geeA 261 58.31 c.2.1.2 90509 1ku1A 230 58.64 a.118.3.1 72996 3bbyA 215 59.45 3c8mA 331 60.09 2ivxA 257 60.14 2qq9A 226 60.26 1hdcA 253 60.29 c.2.1.2 29862 1pbgA 468 60.48 c.1.8.4 28946 2vggA 528 60.89 1tu7A 208 61.28 a.45.1.1,c.47.1.5 112653,112654 2pm7A 399 61.36 2ekpA 239 62.51 2ngrB 234 63.31 a.116.1.1 19105 1tq6A 413 63.98 c.37.1.8 107202 2qghA 425 64.64 2qfnA 138 64.89 1w5tA 412 65.23 a.4.5.11,c.37.1.20 114255,114256 1yixA 265 68.92 c.1.9.12 123371 2b5eA 504 69.03 c.47.1.2,c.47.1.2,c.47.1.2,c.47.1.2 127888,127889,127890,127891 1tv8A 340 69.41 c.1.28.3 107352 1w2xA 758 69.58 c.14.1.4,c.14.1.4 109134,109135 1pbvA 195 70.08 a.118.3.1 19179 2g0wA 296 71.69 c.1.15.4 134503 2qq5A 260 72.00 1hl2A 297 72.27 c.1.10.1 83581 1ec7A 446 72.40 c.1.11.2,d.54.1.1 29218,38862 2h9aA 445 73.18 1ya0A 497 73.31 a.118.8.1 122785 2dskA 311 73.53 2q1zA 184 73.66 1xg5A 279 74.31 c.2.1.2 115277 2fepA 289 74.94 2o09A 189 76.18 2vgiA 528 77.15 2pd6A 264 77.74 2hs5A 239 78.70 2vgfA 528 80.50 2yr1A 257 81.16 1lycA 343 81.39 a.93.1.1 74344 2pt5A 168 82.08 1qf9A 194 82.15 c.37.1.1 31848 2o20A 332 82.27 2r91A 286 82.54 1aj2 282 82.97 1us0A 316 83.33 c.1.7.1 99850 1yx1A 264 83.83 c.1.15.7 124169 1tw9A 206 84.58 a.45.1.1,c.47.1.5 107381,107382 1rlr 761 85.44 1v4vA 376 85.89 c.87.1.3 100313 2b2nA 344 86.51 c.37.1.19 127710 1tx4A 198 86.94 a.116.1.1 19098 3brqA 296 87.41 2j5vA 367 87.64 2vjxA 846 89.87