# List of top-scoring protein chains for TR454.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1pb6A 212 8.79e-19 a.4.1.9,a.121.1.1 88017,88018 1vi0A 206 2.31e-18 a.4.1.9,a.121.1.1 100720,100721 3cdlA 203 2.07e-16 2ibdA 204 2.46e-16 3bcgA 215 1.05e-15 3bhqA 211 1.13e-15 3bruA 222 5.37e-15 2iaiA 230 2.14e-14 2f07A 197 2.27e-14 2uxuA 210 4.18e-14 3ccyA 203 5.13e-14 1zkgA 212 7.35e-14 a.4.1.9,a.121.1.1 125194,125195 2id6A 202 7.39e-14 2iekA 200 7.40e-14 2genA 197 7.91e-14 a.4.1.9,a.121.1.1 135062,135063 2hytA 197 2.03e-13 2fx0A 201 7.45e-13 a.4.1.9,a.121.1.1 134269,134270 1rktA 205 1.17e-12 a.4.1.9,a.121.1.1 97623,97624 2d6yA 202 1.96e-12 a.4.1.9,a.121.1.1 131313,131314 2g7sA 194 1.96e-12 a.4.1.9,a.121.1.1 134737,134738 2eh3A 179 3.40e-12 2jj7A 186 3.86e-12 1jt6A 188 4.60e-12 a.4.1.9,a.121.1.1 67247,67248 1rkwA 194 4.74e-12 a.4.1.9,a.121.1.1 104967,104968 1qvtA 194 5.12e-12 a.4.1.9,a.121.1.1 104602,104603 2g3bA 208 5.27e-12 a.4.1.9,a.121.1.1 134558,134559 2qcoA 210 5.68e-12 2qtqA 213 8.09e-12 2pbxA 203 8.29e-12 2nx4A 194 1.64e-11 2q24A 194 1.74e-11 1ui5A 215 2.49e-11 a.4.1.9,a.121.1.1 107856,107857 2zcmA 192 2.68e-11 2zcnA 192 3.14e-11 3crjA 199 5.26e-11 2gfnA 209 5.42e-11 a.4.1.9,a.121.1.1 135101,135102 3c07A 273 5.59e-11 2pz9A 226 9.34e-11 2qibA 231 9.38e-11 2qwtA 196 1.27e-10 2raeA 207 1.40e-10 2i10A 202 1.83e-10 a.4.1.9,a.121.1.1 136960,136961 2hyjA 200 2.73e-10 2fbqA 235 3.79e-10 a.4.1.9,a.121.1.1 133256,133257 1sgmA 191 4.40e-10 a.4.1.9,a.121.1.1 105537,105538 2fq4A 192 4.78e-10 a.4.1.9,a.121.1.1 133937,133938 2rasA 212 7.84e-10 3colA 196 1.50e-09 2np3A 212 1.73e-09 a.4.1.9,a.121.1.1 138420,138421 2oerA 214 1.97e-09 1u9nA 236 2.23e-09 a.4.1.9,a.121.1.1 113246,113247 2of7A 260 2.23e-09 1t56A 216 2.24e-09 a.4.1.9,a.121.1.1 106428,106429 3b81A 203 2.94e-09 3cwrA 208 3.09e-09 3c2bA 221 4.56e-09 2np5A 203 1.09e-08 a.4.1.9,a.121.1.1 138424,138425 3cjdA 198 2.13e-08 2fd5A 180 2.85e-08 a.4.1.9,a.121.1.1 133291,133292 2rekA 199 3.16e-08 3bjbA 207 3.38e-08 2guhA 214 4.28e-08 3bniA 229 4.95e-08 2id3A 225 5.02e-08 a.4.1.9,a.121.1.1 137261,137262 2zb9A 214 9.81e-08 1t33A 224 1.51e-07 a.4.1.9,a.121.1.1 106295,106296 2dg8A 193 1.52e-07 3bqyA 209 2.24e-07 2ns7A 208 7.51e-07 2dg7A 195 7.95e-07 2hkuA 215 8.91e-07 2o7oA 207 8.95e-07 a.4.1.9,a.121.1.1 138930,138931 2vkeA 208 8.96e-07 2tctA 207 8.97e-07 a.4.1.9,a.121.1.1 16063,19240 1qpiA 203 9.09e-07 a.4.1.9,a.121.1.1 16072,19249 2zozA 183 9.12e-07 2zoyA 185 9.29e-07 2yveA 185 9.40e-07 2yvhA 177 9.48e-07 2trtA 217 9.81e-07 a.4.1.9,a.121.1.1 16064,19241 2oi8A 216 1.09e-06 2hxiA 241 1.21e-06 2vprA 207 1.83e-06 1zk8A 183 2.58e-06 a.4.1.9,a.121.1.1 125177,125178 2qkoA 215 3.02e-06 1z0xA 220 3.03e-06 a.4.1.9,a.121.1.1 124334,124335 1a6iA 217 3.69e-06 a.4.1.9,a.121.1.1 16066,19243 2vkvA 208 1.59e-05 2o7tA 199 2.03e-05 2hxoA 237 5.80e-05 2g7lA 243 0.000115 a.4.1.9,a.121.1.1 134734,134735 2iu5A 195 0.000184 2g7gA 213 0.001195 a.4.1.9,a.121.1.1 134732,134733 2optA 234 0.001212 2o5hA 136 5.365 2zaiA 497 5.392 2pg4A 95 16.93 1kftA 78 18.75 a.60.2.3 77375 1mhyD 521 25.24 a.25.1.2 16780 2e85A 159 31.78 2i8lA 156 32.22 3dbiA 338 34.18 1du6A 64 48.98 a.4.1.1 16002 1pruA 56 50.31 a.35.1.5 17104 1pufB 73 51.48 a.4.1.1 95132 1b72B 87 52.37 a.4.1.1 16001 1qruA 553 52.67 b.53.1.2,c.26.1.1 26946,31585 2nwuA 155 54.58 1nylA 539 56.04 b.53.1.2,c.26.1.1 80741,80742 1ud9A 245 58.03 d.131.1.2,d.131.1.2 107768,107769 1euyA 548 58.05 b.53.1.2,c.26.1.1 26945,31584 1qtqA 553 58.20 b.53.1.2,c.26.1.1 26940,31579 1qrsA 553 58.32 b.53.1.2,c.26.1.1 26941,31580 1o0cA 554 58.53 b.53.1.2,c.26.1.1 86529,86530 1qrtA 553 58.80 b.53.1.2,c.26.1.1 26943,31582 2cv4A 250 59.24 c.47.1.10 130837 1s7oA 113 59.26 a.4.13.3 105354 2rd2A 556 61.44 2douA 376 68.36 3cjeA 167 68.88 1uxcA 65 69.19 a.35.1.5 17119 1hlvA 131 71.60 a.4.1.7,a.4.1.7 65854,65855 1gwcA 230 71.91 a.45.1.1,c.47.1.5 70660,70661 1t2aA 375 73.16 c.2.1.2 99078 1b8iB 63 75.46 a.4.1.1 16011 2qsjA 154 75.46 3fruA 269 77.40 b.1.1.2,d.19.1.1 20657,38150 3bj6A 152 78.13 1zt2A 330 82.97 d.264.1.1 125624 1s1iX 120 83.81 i.1.1.1 105198 1ku9A 152 86.61 a.4.5.36 77544