# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbxA 203 9.04e-20 3bhqA 211 2.06e-19 3ccyA 203 2.34e-19 3bcgA 215 2.35e-19 1vi0A 206 2.61e-19 a.4.1.9,a.121.1.1 100720,100721 2ibdA 204 3.30e-19 2f07A 197 3.41e-19 1qvtA 194 3.90e-19 a.4.1.9,a.121.1.1 104602,104603 2iekA 200 4.72e-19 1rktA 205 4.89e-19 a.4.1.9,a.121.1.1 97623,97624 2zb9A 214 5.26e-19 3crjA 199 5.32e-19 2hyjA 200 6.22e-19 2dg7A 195 6.33e-19 2uxuA 210 6.46e-19 2id6A 202 7.00e-19 2qtqA 213 7.07e-19 3bruA 222 8.06e-19 2genA 197 8.95e-19 a.4.1.9,a.121.1.1 135062,135063 2g7sA 194 9.05e-19 a.4.1.9,a.121.1.1 134737,134738 1jt6A 188 1.08e-18 a.4.1.9,a.121.1.1 67247,67248 2fq4A 192 1.18e-18 a.4.1.9,a.121.1.1 133937,133938 1pb6A 212 1.20e-18 a.4.1.9,a.121.1.1 88017,88018 3cdlA 203 1.22e-18 2rasA 212 1.82e-18 1zkgA 212 1.85e-18 a.4.1.9,a.121.1.1 125194,125195 3c2bA 221 2.32e-18 3b81A 203 2.50e-18 2raeA 207 2.63e-18 2of7A 260 4.20e-18 2zcmA 192 4.25e-18 2hytA 197 4.26e-18 3colA 196 4.76e-18 1z77A 200 5.18e-18 a.4.1.9,a.121.1.1 124588,124589 1t56A 216 5.57e-18 a.4.1.9,a.121.1.1 106428,106429 2iaiA 230 7.88e-18 2id3A 225 8.38e-18 a.4.1.9,a.121.1.1 137261,137262 3cwrA 208 9.65e-18 2o7tA 199 1.14e-17 2qibA 231 1.37e-17 2vkeA 208 1.61e-17 2iu5A 195 1.73e-17 2qcoA 210 1.93e-17 2nx4A 194 2.11e-17 3cjdA 198 2.27e-17 1zk8A 183 2.42e-17 a.4.1.9,a.121.1.1 125177,125178 2q24A 194 2.49e-17 1ui5A 215 2.50e-17 a.4.1.9,a.121.1.1 107856,107857 2vprA 207 2.70e-17 2gfnA 209 2.79e-17 a.4.1.9,a.121.1.1 135101,135102 2i10A 202 2.83e-17 a.4.1.9,a.121.1.1 136960,136961 2jj7A 186 3.49e-17 3bqyA 209 4.09e-17 2fbqA 235 5.16e-17 a.4.1.9,a.121.1.1 133256,133257 1sgmA 191 5.53e-17 a.4.1.9,a.121.1.1 105537,105538 2fx0A 201 5.70e-17 a.4.1.9,a.121.1.1 134269,134270 2o7oA 207 9.08e-17 a.4.1.9,a.121.1.1 138930,138931 2d6yA 202 1.07e-16 a.4.1.9,a.121.1.1 131313,131314 3bniA 229 1.11e-16 1a6i 217 1.30e-16 2optA 234 1.65e-16 2g3bA 208 1.82e-16 a.4.1.9,a.121.1.1 134558,134559 2np5A 203 2.52e-16 a.4.1.9,a.121.1.1 138424,138425 2oerA 214 3.12e-16 3bjbA 207 3.49e-16 1t33A 224 5.24e-16 a.4.1.9,a.121.1.1 106295,106296 2g7gA 213 7.38e-16 a.4.1.9,a.121.1.1 134732,134733 2dg8A 193 8.07e-16 2tct 207 8.39e-16 2rekA 199 8.66e-16 2yveA 185 1.06e-15 2qwtA 196 1.13e-15 2guhA 214 1.41e-15 2eh3A 179 1.85e-15 2qkoA 215 1.94e-15 2oi8A 216 4.65e-15 2fd5A 180 5.72e-15 a.4.1.9,a.121.1.1 133291,133292 1z0xA 220 9.84e-15 a.4.1.9,a.121.1.1 124334,124335 1v7bA 185 2.49e-14 a.4.1.9,a.121.1.1 119861,119862 2g7lA 243 1.02e-13 a.4.1.9,a.121.1.1 134734,134735 2hxoA 237 1.10e-13 2hkuA 215 8.33e-13 1hlvA 131 0.8718 a.4.1.7,a.4.1.7 65854,65855 2jn6A 97 1.036 1a0p 290 3.119 2on5A 206 4.125 2dt5A 211 4.602 a.4.5.38,c.2.1.12 131708,131709 2hnlA 225 4.792 1on2A 142 5.234 a.4.5.24,a.76.1.1 87103,87104 2dtr 226 5.326 2pg4A 95 5.400 2rcyA 262 8.072 1xcbA 211 8.511 a.4.5.38,c.2.1.12 109552,109553 1xo0A 324 9.96 a.60.9.1,d.163.1.1 115674,115675 1jlwA 219 10.50 a.45.1.1,c.47.1.5 71741,71742 1ho8A 480 11.38 a.118.1.9 61107 2rn7A 108 12.75 3bkbA 377 12.92 1fseA 74 13.05 a.4.6.2 60000 1cjgA 62 14.90 a.35.1.5 17112 1wdcC 156 16.27 a.39.1.5 17317 1je8A 82 16.62 a.4.6.2 77108 1m5yA 408 16.63 a.223.1.2,d.26.1.1,d.26.1.1 78664,78665,78666 2bjcA 62 17.47 a.35.1.5 128620 1w07A 659 17.76 a.29.3.2,a.29.3.2,e.6.1.2 114046,114047,114048 2ekcA 262 18.42 1vbjA 281 19.79 1zljA 78 19.88 3dbwA 226 20.23 2fnaA 357 21.70 a.4.5.11,c.37.1.20 133809,133810 3cbuA 214 22.51 1xsvA 113 22.98 a.4.13.3 116003 2pvfA 334 23.14 1r9oA 477 25.03 a.104.1.1 104878 1p4wA 99 26.35 a.4.6.2 87783 1f2eA 201 26.82 a.45.1.1,c.47.1.5 17745,33039 2r8wA 332 28.40 3cblA 377 29.58 2eb2A 334 32.96 3c6gA 479 33.49 1ngkA 128 33.85 a.1.1.1 85673 2v9vA 135 34.98 2imiA 221 35.20 1g8lA 411 36.94 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 1resA 43 37.06 a.4.1.2 16023 2ahrA 259 37.35 a.100.1.10,c.2.1.6 126775,126776 2a2rA 210 37.55 a.45.1.1,c.47.1.5 126058,126059 1oe8A 211 37.68 a.45.1.1,c.47.1.5 86905,86906 1hcrA 52 37.69 a.4.1.2 16020 1s7oA 113 38.19 a.4.13.3 105354 2cx5A 158 39.72 1sedA 117 41.28 a.219.1.1 105449 1fnsA 196 41.34 c.62.1.1 34136 2hoqA 241 41.53 1wdvA 152 43.22 d.116.1.1 114539 1zcbA 362 43.27 a.66.1.1,c.37.1.8 124901,124902 2e0aA 394 44.83 1vz0A 230 45.22 a.4.14.1,d.268.1.1 108929,108930 1fw1A 216 47.08 a.45.1.1,c.47.1.5 60051,60052 4crxA 322 47.25 a.60.9.1,d.163.1.1 18095,42155 3bbyA 215 47.26 1lvaA 258 48.23 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1f24A 402 48.39 a.104.1.1 18953 2o8xA 70 49.47 2o3fA 111 49.60 1lufA 343 52.65 d.144.1.7 78223 3d0cA 314 52.75 2reiA 318 52.83 1bl0A 129 53.96 a.4.1.8,a.4.1.8 16053,16054 2o09A 189 55.60 1auiB 169 57.44 a.39.1.5 17325 3b2tA 311 59.67 2dnxA 130 59.69 2qolA 376 63.14 2ntoA 201 65.12 2jmlA 81 65.23 1m0uA 249 65.26 a.45.1.1,c.47.1.5 78359,78360 1sfxA 109 65.64 a.4.5.50 105505 1gvfA 286 65.88 c.1.10.2 70599 2uuiA 156 66.29 1n2aA 201 67.24 a.45.1.1,c.47.1.5 91553,91554 2rfpA 171 69.01 1yqgA 263 69.34 2dh2A 424 72.59 1yn9A 169 73.24 1k2pA 263 73.54 d.144.1.7 72012 1tu7A 208 74.14 a.45.1.1,c.47.1.5 112653,112654 1f1eA 154 74.79 a.22.1.2 64927 2q0zX 339 75.03 1a0fA 201 78.80 a.45.1.1,c.47.1.5 17737,33031 1rzsA 61 79.18 a.35.1.2 105139 1anfA 370 81.89 c.94.1.1 35776 1lb3A 182 82.17 a.25.1.1 77873 1j09A 468 83.89 a.97.1.1,c.26.1.1 77025,77026 2dtrA 226 84.31 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1lrrA 131 84.37 d.228.1.1 78165 2gdrA 202 84.46 2zfoC 147 84.61 1jlvA 209 89.40 a.45.1.1,c.47.1.5 71729,71730