# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbxA 203 7.50e-21 3bhqA 211 1.19e-20 3bcgA 215 1.56e-20 1vi0A 206 3.03e-20 a.4.1.9,a.121.1.1 100720,100721 3ccyA 203 3.22e-20 2ibdA 204 3.62e-20 2zb9A 214 3.90e-20 1qvtA 194 4.45e-20 a.4.1.9,a.121.1.1 104602,104603 2iekA 200 4.84e-20 2f07A 197 4.96e-20 2uxuA 210 5.09e-20 3crjA 199 5.10e-20 1rktA 205 5.61e-20 a.4.1.9,a.121.1.1 97623,97624 2hyjA 200 5.85e-20 3cdlA 203 7.03e-20 2dg7A 195 8.26e-20 2g7sA 194 8.90e-20 a.4.1.9,a.121.1.1 134737,134738 2id6A 202 9.39e-20 2genA 197 1.04e-19 a.4.1.9,a.121.1.1 135062,135063 3bruA 222 1.09e-19 1jt6A 188 1.10e-19 a.4.1.9,a.121.1.1 67247,67248 2qtqA 213 1.17e-19 3cjdA 198 1.21e-19 2fq4A 192 1.31e-19 a.4.1.9,a.121.1.1 133937,133938 1pb6A 212 1.33e-19 a.4.1.9,a.121.1.1 88017,88018 3c2bA 221 1.70e-19 2rasA 212 1.82e-19 3b81A 203 2.50e-19 1zkgA 212 3.00e-19 a.4.1.9,a.121.1.1 125194,125195 1z77A 200 4.42e-19 a.4.1.9,a.121.1.1 124588,124589 3colA 196 4.93e-19 1t56A 216 4.93e-19 a.4.1.9,a.121.1.1 106428,106429 2raeA 207 5.00e-19 2of7A 260 5.63e-19 2zcmA 192 5.81e-19 2hytA 197 5.95e-19 2id3A 225 8.83e-19 a.4.1.9,a.121.1.1 137261,137262 3cwrA 208 8.96e-19 2iaiA 230 9.17e-19 2nx4A 194 1.30e-18 2qcoA 210 1.68e-18 2vkeA 208 1.73e-18 2o7tA 199 1.84e-18 2iu5A 195 2.01e-18 2qibA 231 2.24e-18 2gfnA 209 3.32e-18 a.4.1.9,a.121.1.1 135101,135102 2q24A 194 3.45e-18 1zk8A 183 3.47e-18 a.4.1.9,a.121.1.1 125177,125178 2vprA 207 3.90e-18 1ui5A 215 4.20e-18 a.4.1.9,a.121.1.1 107856,107857 2jj7A 186 4.61e-18 2i10A 202 4.81e-18 a.4.1.9,a.121.1.1 136960,136961 2fbqA 235 5.03e-18 a.4.1.9,a.121.1.1 133256,133257 1sgmA 191 6.72e-18 a.4.1.9,a.121.1.1 105537,105538 3bqyA 209 6.94e-18 2fx0A 201 7.03e-18 a.4.1.9,a.121.1.1 134269,134270 2o7oA 207 1.33e-17 a.4.1.9,a.121.1.1 138930,138931 2d6yA 202 1.72e-17 a.4.1.9,a.121.1.1 131313,131314 1a6i 217 1.73e-17 2optA 234 2.84e-17 2g3bA 208 3.72e-17 a.4.1.9,a.121.1.1 134558,134559 3bniA 229 3.82e-17 2np5A 203 4.33e-17 a.4.1.9,a.121.1.1 138424,138425 2oerA 214 4.56e-17 3bjbA 207 5.02e-17 1t33A 224 8.58e-17 a.4.1.9,a.121.1.1 106295,106296 2g7gA 213 1.04e-16 a.4.1.9,a.121.1.1 134732,134733 2dg8A 193 1.16e-16 2tct 207 1.19e-16 2qwtA 196 1.35e-16 2qkoA 215 1.38e-16 2yveA 185 1.48e-16 2rekA 199 2.05e-16 2guhA 214 2.27e-16 2eh3A 179 2.85e-16 2fd5A 180 4.80e-16 a.4.1.9,a.121.1.1 133291,133292 2oi8A 216 6.37e-16 1z0xA 220 1.47e-15 a.4.1.9,a.121.1.1 124334,124335 1v7bA 185 6.26e-15 a.4.1.9,a.121.1.1 119861,119862 2hxoA 237 1.88e-14 2g7lA 243 2.17e-14 a.4.1.9,a.121.1.1 134734,134735 2hkuA 215 1.86e-13 1hlvA 131 1.906 a.4.1.7,a.4.1.7 65854,65855 2jn6A 97 2.046 2on5A 206 2.137 1on2A 142 3.624 a.4.5.24,a.76.1.1 87103,87104 2hnlA 225 4.498 1ho8A 480 5.233 a.118.1.9 61107 1w07A 659 5.674 a.29.3.2,a.29.3.2,e.6.1.2 114046,114047,114048 2ekcA 262 7.114 1vbjA 281 9.310 1xo0A 324 10.16 a.60.9.1,d.163.1.1 115674,115675 2pg4A 95 10.91 1xcbA 211 11.07 a.4.5.38,c.2.1.12 109552,109553 2dtr 226 11.77 2dt5A 211 11.86 a.4.5.38,c.2.1.12 131708,131709 1wdcC 156 12.58 a.39.1.5 17317 2rn7A 108 13.08 1a0p 290 13.49 1jlwA 219 14.53 a.45.1.1,c.47.1.5 71741,71742 3bkbA 377 14.61 3cbuA 214 15.73 2eb2A 334 16.33 2rcyA 262 17.30 1m0uA 249 18.50 a.45.1.1,c.47.1.5 78359,78360 1f2eA 201 19.97 a.45.1.1,c.47.1.5 17745,33039 1tu7A 208 20.76 a.45.1.1,c.47.1.5 112653,112654 2a2rA 210 21.64 a.45.1.1,c.47.1.5 126058,126059 2ntoA 201 23.13 1oe8A 211 23.38 a.45.1.1,c.47.1.5 86905,86906 2gsqA 202 23.44 a.45.1.1,c.47.1.5 17715,33009 2fnaA 357 23.57 a.4.5.11,c.37.1.20 133809,133810 2e0aA 394 23.97 2r8wA 332 24.94 3cblA 377 28.31 3chhA 336 28.81 2pvfA 334 29.29 1m5yA 408 29.29 a.223.1.2,d.26.1.1,d.26.1.1 78664,78665,78666 4crxA 322 30.41 a.60.9.1,d.163.1.1 18095,42155 1fseA 74 30.56 a.4.6.2 60000 1je8A 82 30.91 a.4.6.2 77108 1sedA 117 32.12 a.219.1.1 105449 1ngkA 128 33.59 a.1.1.1 85673 2ahrA 259 33.99 a.100.1.10,c.2.1.6 126775,126776 1m48A 133 34.36 a.26.1.2 74443 1zljA 78 36.93 2imiA 221 37.33 1g8lA 411 38.72 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 2bjcA 62 39.27 a.35.1.5 128620 1rl0A 255 40.03 d.165.1.1 111859 1cjgA 62 40.75 a.35.1.5 17112 2o09A 189 41.41 1auiB 169 41.58 a.39.1.5 17325 1fw1A 216 41.96 a.45.1.1,c.47.1.5 60051,60052 2reiA 318 44.48 1lufA 343 46.58 d.144.1.7 78223 3bbyA 215 47.54 2c4jA 218 47.64 a.45.1.1,c.47.1.5 129816,129817 2rfpA 171 47.91 1mvwC 147 48.34 i.15.1.1 79525 2q0zX 339 48.52 3b2tA 311 48.85 1zd8A 227 49.97 1qi7A 253 50.06 d.165.1.1 42210 2dh2A 424 50.63 2oezA 247 52.35 1n2aA 201 53.10 a.45.1.1,c.47.1.5 91553,91554 2dvzA 314 53.63 1p4wA 99 53.70 a.4.6.2 87783 2pvqA 201 57.25 1r9oA 477 57.44 a.104.1.1 104878 1eemA 241 58.57 a.45.1.1,c.47.1.5 17717,33011 1lbkA 208 58.70 a.45.1.1,c.47.1.5 73809,73810 2cx5A 158 58.89 1f3aA 222 59.27 a.45.1.1,c.47.1.5 17701,32995 1vr5A 547 59.68 c.94.1.1 120437 1resA 43 59.96 a.4.1.2 16023 1k3yA 221 60.74 a.45.1.1,c.47.1.5 77245,77246 3c6gA 479 61.17 3d0cA 314 61.40 1bl0A 129 61.70 a.4.1.8,a.4.1.8 16053,16054 2gdrA 202 63.42 1fnsA 196 64.68 c.62.1.1 34136 2jmlA 81 64.80 2qolA 376 67.15 1pp7U 131 71.14 a.4.5.44 94973 2ghaA 382 74.26 1wdvA 152 74.99 d.116.1.1 114539 1s1iG 119 75.81 i.1.1.1 105181 1o5hA 214 78.37 a.191.1.1 92497 1xsvA 113 78.50 a.4.13.3 116003 1gkzA 388 79.02 a.29.5.1,d.122.1.4 65268,65269 1f24A 402 79.16 a.104.1.1 18953 1k2pA 263 80.21 d.144.1.7 72012 1j09A 468 80.27 a.97.1.1,c.26.1.1 77025,77026 2f5xA 312 81.56 1lb3A 182 82.19 a.25.1.1 77873 1ct5A 256 83.53 c.1.6.2 28663 1yn9A 169 84.61 1gvfA 286 84.91 c.1.10.2 70599 1f1eA 154 86.14 a.22.1.2 64927 1nfpA 228 87.58 c.1.16.2 29555 1anfA 370 88.39 c.94.1.1 35776 1qkmA 255 89.81 a.123.1.1 19309