# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbxA 203 4.11e-21 3bcgA 215 1.21e-20 3bhqA 211 1.58e-20 2ibdA 204 1.75e-20 1vi0A 206 1.92e-20 a.4.1.9,a.121.1.1 100720,100721 2zb9A 214 2.87e-20 2genA 197 2.92e-20 a.4.1.9,a.121.1.1 135062,135063 2f07A 197 3.34e-20 2iekA 200 3.68e-20 2uxuA 210 3.97e-20 3bruA 222 4.13e-20 1qvtA 194 4.20e-20 a.4.1.9,a.121.1.1 104602,104603 3ccyA 203 4.58e-20 1rktA 205 5.25e-20 a.4.1.9,a.121.1.1 97623,97624 2g7sA 194 5.57e-20 a.4.1.9,a.121.1.1 134737,134738 2dg7A 195 5.67e-20 3cdlA 203 6.02e-20 2qtqA 213 6.09e-20 3crjA 199 6.87e-20 2id6A 202 7.07e-20 2rasA 212 7.36e-20 2hyjA 200 8.03e-20 1pb6A 212 9.87e-20 a.4.1.9,a.121.1.1 88017,88018 1jt6A 188 1.23e-19 a.4.1.9,a.121.1.1 67247,67248 3c2bA 221 1.25e-19 2fq4A 192 1.55e-19 a.4.1.9,a.121.1.1 133937,133938 2raeA 207 1.63e-19 3b81A 203 1.65e-19 3cjdA 198 1.66e-19 1zkgA 212 2.24e-19 a.4.1.9,a.121.1.1 125194,125195 2id3A 225 3.60e-19 a.4.1.9,a.121.1.1 137261,137262 2of7A 260 3.62e-19 3colA 196 4.07e-19 1z77A 200 4.18e-19 a.4.1.9,a.121.1.1 124588,124589 1t56A 216 4.26e-19 a.4.1.9,a.121.1.1 106428,106429 2iaiA 230 4.76e-19 2zcmA 192 5.05e-19 2hytA 197 6.46e-19 3cwrA 208 7.44e-19 2nx4A 194 9.84e-19 2gfnA 209 1.23e-18 a.4.1.9,a.121.1.1 135101,135102 2i10A 202 2.01e-18 a.4.1.9,a.121.1.1 136960,136961 2jj7A 186 2.12e-18 2q24A 194 2.20e-18 2qcoA 210 2.43e-18 2vkeA 208 2.98e-18 1ui5A 215 3.11e-18 a.4.1.9,a.121.1.1 107856,107857 2vprA 207 3.39e-18 2o7tA 199 3.47e-18 1zk8A 183 3.57e-18 a.4.1.9,a.121.1.1 125177,125178 2fbqA 235 4.37e-18 a.4.1.9,a.121.1.1 133256,133257 2qibA 231 4.76e-18 1sgmA 191 4.91e-18 a.4.1.9,a.121.1.1 105537,105538 2fx0A 201 5.87e-18 a.4.1.9,a.121.1.1 134269,134270 2d6yA 202 6.47e-18 a.4.1.9,a.121.1.1 131313,131314 2iu5A 195 8.63e-18 3bqyA 209 9.94e-18 2o7oA 207 1.26e-17 a.4.1.9,a.121.1.1 138930,138931 2g3bA 208 1.27e-17 a.4.1.9,a.121.1.1 134558,134559 3bniA 229 2.18e-17 1a6i 217 2.42e-17 2optA 234 3.64e-17 2np5A 203 4.95e-17 a.4.1.9,a.121.1.1 138424,138425 3bjbA 207 6.65e-17 2oerA 214 6.95e-17 2tct 207 9.53e-17 2g7gA 213 1.09e-16 a.4.1.9,a.121.1.1 134732,134733 1t33A 224 1.19e-16 a.4.1.9,a.121.1.1 106295,106296 2qwtA 196 1.28e-16 2rekA 199 1.67e-16 2dg8A 193 1.80e-16 2yveA 185 2.12e-16 2guhA 214 3.47e-16 2fd5A 180 4.39e-16 a.4.1.9,a.121.1.1 133291,133292 2eh3A 179 5.05e-16 2qkoA 215 8.18e-16 2oi8A 216 1.32e-15 1z0xA 220 1.46e-15 a.4.1.9,a.121.1.1 124334,124335 1v7bA 185 6.90e-15 a.4.1.9,a.121.1.1 119861,119862 2hxoA 237 1.25e-14 2g7lA 243 1.75e-14 a.4.1.9,a.121.1.1 134734,134735 2hkuA 215 1.63e-13 1hlvA 131 0.5475 a.4.1.7,a.4.1.7 65854,65855 2jn6A 97 0.6854 1on2A 142 1.514 a.4.5.24,a.76.1.1 87103,87104 2pg4A 95 1.998 2dt5A 211 2.473 a.4.5.38,c.2.1.12 131708,131709 1xcbA 211 2.695 a.4.5.38,c.2.1.12 109552,109553 2hnlA 225 3.544 1fseA 74 4.421 a.4.6.2 60000 1je8A 82 4.920 a.4.6.2 77108 1a0p 290 4.994 1zljA 78 5.144 1w07A 659 5.386 a.29.3.2,a.29.3.2,e.6.1.2 114046,114047,114048 2rn7A 108 5.934 1p4wA 99 6.622 a.4.6.2 87783 2bjcA 62 6.682 a.35.1.5 128620 1cjgA 62 7.131 a.35.1.5 17112 2rcyA 262 8.786 1f2eA 201 11.25 a.45.1.1,c.47.1.5 17745,33039 2on5A 206 11.40 2obhA 143 13.19 1lvaA 258 13.38 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 2fnaA 357 13.81 a.4.5.11,c.37.1.20 133809,133810 2ahrA 259 14.40 a.100.1.10,c.2.1.6 126775,126776 2o3fA 111 14.97 1fnsA 196 15.12 c.62.1.1 34136 2dtr 226 18.09 1vbjA 281 18.45 1s7oA 113 18.76 a.4.13.3 105354 2biiA 424 18.99 2v9vA 135 20.72 1xsvA 113 20.87 a.4.13.3 116003 1zd8A 227 21.06 1vz0A 230 21.66 a.4.14.1,d.268.1.1 108929,108930 1ho8A 480 22.54 a.118.1.9 61107 1sfxA 109 22.95 a.4.5.50 105505 1wdvA 152 24.04 d.116.1.1 114539 1mvwC 147 25.13 i.15.1.1 79525 2cx5A 158 26.20 1x1zA 252 26.37 c.1.2.3 121613 1y1xA 191 26.56 a.39.1.8 116374 2r8wA 332 27.43 1auiB 169 27.74 a.39.1.5 17325 3cbuA 214 28.04 2q0zX 339 28.04 2gv5A 161 30.06 2o8xA 70 31.50 3cloA 258 32.26 2bnmA 198 33.17 a.35.1.3,b.82.1.10 128835,128836 1m0uA 249 33.79 a.45.1.1,c.47.1.5 78359,78360 1wpkA 146 34.52 1j09A 468 34.75 a.97.1.1,c.26.1.1 77025,77026 1a0fA 201 35.57 a.45.1.1,c.47.1.5 17737,33031 1l3lA 234 35.59 a.4.6.2,d.110.5.1 73541,73542 1r69 69 35.70 1wdcC 156 36.23 a.39.1.5 17317 1xo5A 183 36.31 a.39.1.5 115680 1anfA 370 36.64 c.94.1.1 35776 1neqA 74 36.73 a.35.1.2 17063 3c57A 95 37.02 3bbyA 215 37.44 2hoqA 241 38.60 1utxA 66 39.57 a.35.1.3 108034 1jftA 340 41.70 a.35.1.5,c.93.1.1 66652,66653 2scpA 174 41.73 a.39.1.5 17256 1wsuA 124 42.87 a.4.5.35,a.4.5.35 121245,121246 2ghaA 382 43.45 1zcbA 362 45.10 a.66.1.1,c.37.1.8 124901,124902 1n2aA 201 45.86 a.45.1.1,c.47.1.5 91553,91554 1sedA 117 45.92 a.219.1.1 105449 1f4qA 165 47.52 a.39.1.8 17360 1rzsA 61 47.81 a.35.1.2 105139 2h27A 73 48.70 a.4.13.2 135993 3bg2A 444 49.01 1ijbA 202 49.68 c.62.1.1 71229 1r1tA 122 50.12 a.4.5.5 104769 2a2rA 210 51.23 a.45.1.1,c.47.1.5 126058,126059 1adrA 76 51.68 a.35.1.2 17042 1smtA 122 52.38 a.4.5.5 16109 1resA 43 52.40 a.4.1.2 16023 2ab5A 269 52.41 3dbwA 226 52.49 2bl0B 145 54.00 2imiA 221 54.81 3c6gA 479 55.65 2dnxA 130 55.99 1r69A 69 56.31 a.35.1.2 17028 2e0aA 394 57.66 2croA 71 59.00 a.35.1.2 17038 1m48A 133 59.03 a.26.1.2 74443 2eb2A 334 59.17 1yqgA 263 59.19 2ofyA 86 59.27 2o09A 189 59.72 2cro 71 59.78 1oe8A 211 60.01 a.45.1.1,c.47.1.5 86905,86906 1b0nA 111 60.51 a.34.1.1,a.35.1.3 17001,17064 1k94A 165 61.01 a.39.1.8 68333 2r1jL 68 62.04 2o5gA 148 63.73 3b7hA 78 64.09 1xo0A 324 65.58 a.60.9.1,d.163.1.1 115674,115675 1gkzA 388 66.57 a.29.5.1,d.122.1.4 65268,65269 3bkbA 377 66.92 2ictA 94 69.21 2b5aA 77 71.58 a.35.1.3 127882 1fw1A 216 71.69 a.45.1.1,c.47.1.5 60051,60052 2cfxA 144 72.20 a.4.5.32,d.58.4.2 130395,130396 1oqyA 368 72.77 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1u8bA 133 73.25 3cs1A 219 73.50 1pt7A 437 74.88 c.123.1.1 95093 2dh2A 424 76.01 1f24A 402 76.16 a.104.1.1 18953 1u2wA 122 76.80 a.4.5.5 119487 2q0oA 236 78.16 1i5nA 146 78.27 a.24.10.3 61805 1hcrA 52 79.47 a.4.1.2 16020 2o0yA 260 80.51 1r8mE 203 80.74 a.118.3.1 97242 2jamA 304 81.02 2g3fA 421 81.27 3inkC 133 82.22 a.26.1.2 16881 2auwA 170 83.02 a.35.1.10,d.331.1.1 127339,127340 1ku1A 230 83.62 a.118.3.1 72996 1uhnA 189 83.81 a.39.1.5 99399 1y9qA 192 84.39 a.35.1.8,b.82.1.15 116592,116593 2ddhA 661 84.73 a.29.3.2,a.29.3.2,e.6.1.2 131394,131395,131396 1jgsA 138 85.44 a.4.5.28 66683 2g7uA 257 85.84 1r9oA 477 87.72 a.104.1.1 104878 1k0dA 260 88.19 a.45.1.1,c.47.1.5 67930,67931 1g8lA 411 89.57 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 2ia2A 265 89.73