# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3bhqA 211 4.49e-21 2pbxA 203 7.13e-21 3ccyA 203 9.46e-21 1vi0A 206 1.49e-20 a.4.1.9,a.121.1.1 100720,100721 1qvtA 194 1.85e-20 a.4.1.9,a.121.1.1 104602,104603 2ibdA 204 2.69e-20 2f07A 197 3.68e-20 2id6A 202 3.89e-20 2iekA 200 4.33e-20 1rktA 205 4.50e-20 a.4.1.9,a.121.1.1 97623,97624 3bcgA 215 4.58e-20 2hyjA 200 4.98e-20 1zkgA 212 5.11e-20 a.4.1.9,a.121.1.1 125194,125195 1jt6A 188 5.37e-20 a.4.1.9,a.121.1.1 67247,67248 2zb9A 214 5.46e-20 2dg7A 195 5.85e-20 3crjA 199 6.10e-20 3cdlA 203 6.23e-20 3c2bA 221 7.90e-20 2g7sA 194 1.01e-19 a.4.1.9,a.121.1.1 134737,134738 2genA 197 1.39e-19 a.4.1.9,a.121.1.1 135062,135063 2qtqA 213 1.43e-19 2uxuA 210 1.45e-19 2fq4A 192 1.52e-19 a.4.1.9,a.121.1.1 133937,133938 3bruA 222 1.65e-19 2raeA 207 2.16e-19 3b81A 203 2.30e-19 2rasA 212 2.50e-19 1pb6A 212 2.80e-19 a.4.1.9,a.121.1.1 88017,88018 2qcoA 210 3.01e-19 1z77A 200 3.22e-19 a.4.1.9,a.121.1.1 124588,124589 2of7A 260 3.66e-19 3colA 196 4.39e-19 2hytA 197 4.69e-19 1t56A 216 5.75e-19 a.4.1.9,a.121.1.1 106428,106429 2zcmA 192 6.21e-19 2id3A 225 7.84e-19 a.4.1.9,a.121.1.1 137261,137262 2iaiA 230 1.33e-18 3cwrA 208 1.35e-18 2o7tA 199 1.36e-18 2vkeA 208 1.70e-18 2iu5A 195 1.70e-18 3cjdA 198 1.80e-18 2qibA 231 1.88e-18 2nx4A 194 1.96e-18 1ui5A 215 2.06e-18 a.4.1.9,a.121.1.1 107856,107857 1zk8A 183 2.62e-18 a.4.1.9,a.121.1.1 125177,125178 2gfnA 209 3.27e-18 a.4.1.9,a.121.1.1 135101,135102 2vprA 207 3.79e-18 2q24A 194 4.80e-18 2jj7A 186 4.82e-18 1sgmA 191 5.49e-18 a.4.1.9,a.121.1.1 105537,105538 2fx0A 201 6.85e-18 a.4.1.9,a.121.1.1 134269,134270 2i10A 202 7.91e-18 a.4.1.9,a.121.1.1 136960,136961 3bniA 229 1.14e-17 2g3bA 208 1.23e-17 a.4.1.9,a.121.1.1 134558,134559 2fbqA 235 1.60e-17 a.4.1.9,a.121.1.1 133256,133257 3bqyA 209 2.00e-17 2o7oA 207 2.15e-17 a.4.1.9,a.121.1.1 138930,138931 2optA 234 3.05e-17 2np5A 203 3.59e-17 a.4.1.9,a.121.1.1 138424,138425 2d6yA 202 3.91e-17 a.4.1.9,a.121.1.1 131313,131314 1a6i 217 4.08e-17 2oerA 214 5.77e-17 2tct 207 8.70e-17 2g7gA 213 1.07e-16 a.4.1.9,a.121.1.1 134732,134733 3bjbA 207 1.07e-16 1t33A 224 1.11e-16 a.4.1.9,a.121.1.1 106295,106296 2yveA 185 1.59e-16 2qkoA 215 1.98e-16 2rekA 199 2.10e-16 2fd5A 180 2.13e-16 a.4.1.9,a.121.1.1 133291,133292 2dg8A 193 2.22e-16 2qwtA 196 2.48e-16 2oi8A 216 3.15e-16 2guhA 214 3.71e-16 2eh3A 179 4.51e-16 1z0xA 220 2.29e-15 a.4.1.9,a.121.1.1 124334,124335 2hxoA 237 6.17e-15 1v7bA 185 8.12e-15 a.4.1.9,a.121.1.1 119861,119862 2g7lA 243 2.63e-14 a.4.1.9,a.121.1.1 134734,134735 2hkuA 215 9.91e-14 2jn6A 97 2.237 2on5A 206 3.721 1hlvA 131 4.511 a.4.1.7,a.4.1.7 65854,65855 1ho8A 480 5.157 a.118.1.9 61107 1wdcC 156 5.666 a.39.1.5 17317 1a0p 290 5.893 2hnlA 225 6.937 1jlwA 219 7.030 a.45.1.1,c.47.1.5 71741,71742 1on2A 142 7.273 a.4.5.24,a.76.1.1 87103,87104 2pg4A 95 7.331 2rcyA 262 12.47 3dbwA 226 12.74 3bkbA 377 13.54 1cjgA 62 14.07 a.35.1.5 17112 3b6hA 498 14.27 2dt5A 211 14.33 a.4.5.38,c.2.1.12 131708,131709 1ngkA 128 15.12 a.1.1.1 85673 2bjcA 62 15.21 a.35.1.5 128620 1fseA 74 15.39 a.4.6.2 60000 1oe8A 211 16.02 a.45.1.1,c.47.1.5 86905,86906 1vbjA 281 16.25 1xo0A 324 16.86 a.60.9.1,d.163.1.1 115674,115675 1f24A 402 18.12 a.104.1.1 18953 2v9vA 135 18.37 3cblA 377 19.40 2e0aA 394 20.47 1xcbA 211 21.67 a.4.5.38,c.2.1.12 109552,109553 2ekcA 262 23.18 2fnaA 357 23.54 a.4.5.11,c.37.1.20 133809,133810 2ahrA 259 24.55 a.100.1.10,c.2.1.6 126775,126776 1w07A 659 24.61 a.29.3.2,a.29.3.2,e.6.1.2 114046,114047,114048 2pvfA 334 24.86 2gsqA 202 25.18 a.45.1.1,c.47.1.5 17715,33009 1zcbA 362 25.31 a.66.1.1,c.37.1.8 124901,124902 1g8lA 411 25.37 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 2dtr 226 26.80 2a2rA 210 29.25 a.45.1.1,c.47.1.5 126058,126059 1zljA 78 29.41 2q88A 257 29.42 3chhA 336 30.81 1je8A 82 31.35 a.4.6.2 77108 1gvfA 286 32.30 c.1.10.2 70599 1r9oA 477 32.77 a.104.1.1 104878 2eb2A 334 33.07 2reiA 318 34.18 3d0cA 314 34.29 1nhyA 219 35.29 a.45.1.1,c.47.1.5 80520,80521 1auiB 169 36.70 a.39.1.5 17325 1kxuA 333 36.84 a.74.1.1,a.74.1.1 18358,18359 1f2eA 201 37.19 a.45.1.1,c.47.1.5 17745,33039 2o8xA 70 37.71 2d1eA 248 40.72 1f1eA 154 44.17 a.22.1.2 64927 1p4wA 99 45.32 a.4.6.2 87783 1tqnA 486 45.41 a.104.1.1 107238 2rn7A 108 46.02 1anfA 370 47.31 c.94.1.1 35776 1k3yA 221 47.41 a.45.1.1,c.47.1.5 77245,77246 1xo5A 183 47.83 a.39.1.5 115680 3c6gA 479 49.88 3b2tA 311 50.13 1y1xA 191 51.18 a.39.1.8 116374 1m48A 133 51.58 a.26.1.2 74443 2o3fA 111 52.62 2dvzA 314 52.65 2g0dA 409 53.17 1wdvA 152 54.57 d.116.1.1 114539 1sedA 117 56.72 a.219.1.1 105449 1z2cB 383 56.85 a.118.1.23 124377 2q0zX 339 58.18 2dnxA 130 58.38 2cx5A 158 59.40 2pvqA 201 60.80 3bbyA 215 61.12 1yn9A 169 61.36 1fnsA 196 61.66 c.62.1.1 34136 2ghaA 382 62.79 1j09A 468 64.00 a.97.1.1,c.26.1.1 77025,77026 3ddeA 239 64.03 1ltqA 301 66.32 c.108.1.9,c.37.1.1 78208,78209 1lufA 343 67.01 d.144.1.7 78223 1s69A 124 67.08 a.1.1.1 105305 1oyzA 280 67.46 a.118.1.16 93775 2h27A 73 69.63 a.4.13.2 135993 2o09A 189 70.98 2ii0A 490 71.04 a.117.1.1 137425 2ntoA 201 71.26 1fw1A 216 71.95 a.45.1.1,c.47.1.5 60051,60052 1pp7U 131 71.95 a.4.5.44 94973 2gv5A 161 71.95 1resA 43 72.55 a.4.1.2 16023 1s7oA 113 74.34 a.4.13.3 105354 1lshA 1056 74.52 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 2hiqA 113 74.93 d.58.4.12 136529 3inkC 133 74.95 a.26.1.2 16881 1xsvA 113 75.26 a.4.13.3 116003 2oxoA 103 75.47 1k94A 165 76.48 a.39.1.8 68333 2vc7A 314 76.56 2f5xA 312 76.56 1mvwC 147 77.09 i.15.1.1 79525 1xszA 356 77.25 a.118.3.1,d.129.9.1 116005,116006 1ug3A 339 78.92 a.118.1.14,a.118.1.14 119671,119672 1w5tA 412 80.29 a.4.5.11,c.37.1.20 114255,114256 2gykA 86 80.65 1emvA 86 80.70 a.28.2.1 16944 1k0dA 260 81.21 a.45.1.1,c.47.1.5 67930,67931 1dlyA 164 81.35 a.1.1.1 14983 2vlqA 86 81.78 1lvaA 258 83.27 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 2bk9A 153 84.51 2ehhA 294 85.13 2ijmA 281 85.98 2f9iB 285 86.23 1fr2A 86 86.87 a.28.2.1 83256 1jlvA 209 87.98 a.45.1.1,c.47.1.5 71729,71730 1f3aA 222 88.10 a.45.1.1,c.47.1.5 17701,32995 2c1mA 424 88.58