# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bhqA	211	9.99e-21		
2pbxA	203	1.32e-20		
3ccyA	203	2.13e-20		
1vi0A	206	2.47e-20	a.4.1.9,a.121.1.1	100720,100721
1qvtA	194	3.71e-20	a.4.1.9,a.121.1.1	104602,104603
2f07A	197	5.75e-20		
2hyjA	200	6.75e-20		
2zb9A	214	7.77e-20		
2ibdA	204	8.24e-20		
2iekA	200	8.28e-20		
3crjA	199	8.84e-20		
2id6A	202	8.86e-20		
3bcgA	215	9.72e-20		
1rktA	205	9.74e-20	a.4.1.9,a.121.1.1	97623,97624
1jt6A	188	1.06e-19	a.4.1.9,a.121.1.1	67247,67248
1zkgA	212	1.06e-19	a.4.1.9,a.121.1.1	125194,125195
2dg7A	195	1.12e-19		
3cdlA	203	1.15e-19		
3c2bA	221	1.41e-19		
2g7sA	194	1.55e-19	a.4.1.9,a.121.1.1	134737,134738
2uxuA	210	2.56e-19		
2fq4A	192	2.86e-19	a.4.1.9,a.121.1.1	133937,133938
2genA	197	2.96e-19	a.4.1.9,a.121.1.1	135062,135063
3bruA	222	2.99e-19		
2qtqA	213	3.01e-19		
2rasA	212	3.39e-19		
2raeA	207	4.14e-19		
3b81A	203	4.36e-19		
1z77A	200	5.78e-19	a.4.1.9,a.121.1.1	124588,124589
1pb6A	212	5.80e-19	a.4.1.9,a.121.1.1	88017,88018
2qcoA	210	5.93e-19		
3colA	196	6.08e-19		
2hytA	197	6.88e-19		
2of7A	260	7.63e-19		
2id3A	225	1.06e-18	a.4.1.9,a.121.1.1	137261,137262
1t56A	216	1.19e-18	a.4.1.9,a.121.1.1	106428,106429
2zcmA	192	1.50e-18		
2iaiA	230	1.82e-18		
2vkeA	208	2.03e-18		
3cwrA	208	2.41e-18		
2iu5A	195	3.01e-18		
2qibA	231	3.23e-18		
2o7tA	199	3.26e-18		
3cjdA	198	3.38e-18		
2nx4A	194	3.57e-18		
1ui5A	215	3.98e-18	a.4.1.9,a.121.1.1	107856,107857
2vprA	207	5.83e-18		
1zk8A	183	6.25e-18	a.4.1.9,a.121.1.1	125177,125178
2gfnA	209	6.30e-18	a.4.1.9,a.121.1.1	135101,135102
2q24A	194	8.30e-18		
1sgmA	191	9.35e-18	a.4.1.9,a.121.1.1	105537,105538
2jj7A	186	9.58e-18		
2i10A	202	1.07e-17	a.4.1.9,a.121.1.1	136960,136961
2fx0A	201	1.23e-17	a.4.1.9,a.121.1.1	134269,134270
3bniA	229	1.67e-17		
2g3bA	208	2.11e-17	a.4.1.9,a.121.1.1	134558,134559
2fbqA	235	2.71e-17	a.4.1.9,a.121.1.1	133256,133257
2o7oA	207	3.23e-17	a.4.1.9,a.121.1.1	138930,138931
3bqyA	209	3.42e-17		
2optA	234	4.10e-17		
2np5A	203	5.34e-17	a.4.1.9,a.121.1.1	138424,138425
1a6i	217	6.06e-17		
2d6yA	202	1.03e-16	a.4.1.9,a.121.1.1	131313,131314
2tct	207	1.06e-16		
2oerA	214	1.21e-16		
2g7gA	213	1.25e-16	a.4.1.9,a.121.1.1	134732,134733
3bjbA	207	2.14e-16		
2fd5A	180	2.42e-16	a.4.1.9,a.121.1.1	133291,133292
2qkoA	215	2.84e-16		
2rekA	199	2.91e-16		
1t33A	224	3.02e-16	a.4.1.9,a.121.1.1	106295,106296
2yveA	185	3.46e-16		
2dg8A	193	3.64e-16		
2oi8A	216	5.17e-16		
2guhA	214	5.73e-16		
2qwtA	196	5.97e-16		
2eh3A	179	7.17e-16		
1z0xA	220	2.89e-15	a.4.1.9,a.121.1.1	124334,124335
2hxoA	237	1.06e-14		
1v7bA	185	1.28e-14	a.4.1.9,a.121.1.1	119861,119862
2g7lA	243	3.17e-14	a.4.1.9,a.121.1.1	134734,134735
2hkuA	215	1.43e-13		
2jn6A	97	1.967		
1hlvA	131	2.992	a.4.1.7,a.4.1.7	65854,65855
2pg4A	95	6.272		
1jlwA	219	6.408	a.45.1.1,c.47.1.5	71741,71742
1a0p	290	6.457		
2hnlA	225	6.745		
1ho8A	480	9.433	a.118.1.9	61107
1wdcC	156	9.752	a.39.1.5	17317
3dbwA	226	10.64		
3bkbA	377	10.93		
1cjgA	62	11.14	a.35.1.5	17112
2dt5A	211	11.20	a.4.5.38,c.2.1.12	131708,131709
1xo0A	324	11.65	a.60.9.1,d.163.1.1	115674,115675
1fseA	74	11.68	a.4.6.2	60000
2on5A	206	12.30		
2pvfA	334	12.31		
1vbjA	281	14.01		
2bjcA	62	14.11	a.35.1.5	128620
3cblA	377	14.27		
1ngkA	128	14.43	a.1.1.1	85673
1oe8A	211	14.64	a.45.1.1,c.47.1.5	86905,86906
2rcyA	262	14.69		
1nhyA	219	17.14	a.45.1.1,c.47.1.5	80520,80521
1zcbA	362	17.76	a.66.1.1,c.37.1.8	124901,124902
2gsqA	202	18.18	a.45.1.1,c.47.1.5	17715,33009
2reiA	318	19.11		
2ekcA	262	19.62		
1je8A	82	20.70	a.4.6.2	77108
1on2A	142	22.02	a.4.5.24,a.76.1.1	87103,87104
3b6hA	498	22.02		
2e0aA	394	23.19		
1zljA	78	23.73		
1f2eA	201	24.38	a.45.1.1,c.47.1.5	17745,33039
1f24A	402	24.51	a.104.1.1	18953
1w07A	659	24.73	a.29.3.2,a.29.3.2,e.6.1.2	114046,114047,114048
1r9oA	477	25.06	a.104.1.1	104878
1xcbA	211	25.48	a.4.5.38,c.2.1.12	109552,109553
2q88A	257	25.91		
2v9vA	135	26.36		
1g8lA	411	28.41	b.85.6.1,b.103.1.1,c.57.1.2	60365,60366,60367
2rn7A	108	29.44		
2ahrA	259	29.95	a.100.1.10,c.2.1.6	126775,126776
2a2rA	210	30.72	a.45.1.1,c.47.1.5	126058,126059
1gvfA	286	30.82	c.1.10.2	70599
1p4wA	99	31.28	a.4.6.2	87783
1lufA	343	31.81	d.144.1.7	78223
2eb2A	334	32.75		
1auiB	169	35.14	a.39.1.5	17325
2dtr	226	35.87		
3b2tA	311	36.42		
2o8xA	70	36.89		
2d1eA	248	37.16		
1yn9A	169	38.38		
2fnaA	357	40.97	a.4.5.11,c.37.1.20	133809,133810
1kxuA	333	45.53	a.74.1.1,a.74.1.1	18358,18359
2oxoA	103	45.68		
1fnsA	196	45.70	c.62.1.1	34136
2dvzA	314	46.71		
1k2pA	263	47.22	d.144.1.7	72012
2o3fA	111	48.44		
2dnxA	130	49.44		
1fw1A	216	50.98	a.45.1.1,c.47.1.5	60051,60052
3d0cA	314	51.46		
2qolA	376	52.47		
1tqnA	486	53.36	a.104.1.1	107238
1ltqA	301	53.65	c.108.1.9,c.37.1.1	78208,78209
3chhA	336	54.71		
1wdvA	152	55.63	d.116.1.1	114539
1s69A	124	55.75	a.1.1.1	105305
1s7oA	113	56.27	a.4.13.3	105354
1k3yA	221	57.89	a.45.1.1,c.47.1.5	77245,77246
2o09A	189	58.77		
1xsvA	113	60.26	a.4.13.3	116003
1z2cB	383	60.33	a.118.1.23	124377
1anfA	370	60.60	c.94.1.1	35776
2ii0A	490	61.22	a.117.1.1	137425
1vr5A	547	61.47	c.94.1.1	120437
2vc7A	314	62.30		
2cx5A	158	63.04		
1f1eA	154	65.05	a.22.1.2	64927
2ijmA	281	66.54		
1ug3A	339	67.36	a.118.1.14,a.118.1.14	119671,119672
2g3fA	421	67.43		
1resA	43	68.26	a.4.1.2	16023
2pvqA	201	68.55		
1k0dA	260	68.62	a.45.1.1,c.47.1.5	67930,67931
2ntoA	201	69.18		
1w5tA	412	70.84	a.4.5.11,c.37.1.20	114255,114256
1sedA	117	70.87	a.219.1.1	105449
1oyzA	280	71.58	a.118.1.16	93775
1dlyA	164	73.45	a.1.1.1	14983
2rfpA	171	73.80		
3ddeA	239	74.24		
1u61A	138	75.04	a.149.1.1	107696
1jlvA	209	76.31	a.45.1.1,c.47.1.5	71729,71730
1lrrA	131	76.37	d.228.1.1	78165
1m0uA	249	76.47	a.45.1.1,c.47.1.5	78359,78360
2zfoC	147	76.55		
2jmlA	81	81.28		
1sfxA	109	81.43	a.4.5.50	105505
1emvA	86	82.50	a.28.2.1	16944
1m48A	133	82.95	a.26.1.2	74443
1svsA	353	83.85	c.37.1.8	106051
1fr2A	86	84.32	a.28.2.1	83256
1xszA	356	84.38	a.118.3.1,d.129.9.1	116005,116006
1qqcA	773	85.05	c.55.3.5,e.8.1.1	33724,43013
1nfpA	228	85.35	c.1.16.2	29555
2gykA	86	86.91		
3bbyA	215	87.08		
2h27A	73	87.33	a.4.13.2	135993
2ghaA	382	87.44		
1vz0A	230	87.60	a.4.14.1,d.268.1.1	108929,108930
3c6gA	479	87.96		
1n2aA	201	87.96	a.45.1.1,c.47.1.5	91553,91554
1x9fA	151	88.20	a.1.1.2	114983
2hoqA	241	88.67		
2bk9A	153	88.89		
1cby	259	88.99