# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3bhqA 211 9.08e-21 2pbxA 203 9.47e-21 3ccyA 203 1.84e-20 1qvtA 194 2.12e-20 a.4.1.9,a.121.1.1 104602,104603 1vi0A 206 2.46e-20 a.4.1.9,a.121.1.1 100720,100721 2f07A 197 5.06e-20 2zb9A 214 5.58e-20 2dg7A 195 5.82e-20 3bcgA 215 5.90e-20 1rktA 205 6.15e-20 a.4.1.9,a.121.1.1 97623,97624 1jt6A 188 6.42e-20 a.4.1.9,a.121.1.1 67247,67248 2id6A 202 6.81e-20 2iekA 200 6.82e-20 2ibdA 204 6.87e-20 2hyjA 200 7.13e-20 3crjA 199 7.35e-20 1zkgA 212 7.65e-20 a.4.1.9,a.121.1.1 125194,125195 3cdlA 203 9.12e-20 2g7sA 194 1.48e-19 a.4.1.9,a.121.1.1 134737,134738 3c2bA 221 1.60e-19 2uxuA 210 1.85e-19 2fq4A 192 2.21e-19 a.4.1.9,a.121.1.1 133937,133938 2qtqA 213 2.22e-19 3bruA 222 2.53e-19 2genA 197 2.68e-19 a.4.1.9,a.121.1.1 135062,135063 2raeA 207 3.60e-19 3b81A 203 3.75e-19 1pb6A 212 4.18e-19 a.4.1.9,a.121.1.1 88017,88018 2qcoA 210 4.53e-19 2hytA 197 4.65e-19 1z77A 200 4.97e-19 a.4.1.9,a.121.1.1 124588,124589 2rasA 212 5.72e-19 2of7A 260 6.55e-19 3colA 196 7.95e-19 2zcmA 192 8.94e-19 1t56A 216 1.11e-18 a.4.1.9,a.121.1.1 106428,106429 2id3A 225 1.31e-18 a.4.1.9,a.121.1.1 137261,137262 2vkeA 208 1.73e-18 2iaiA 230 1.83e-18 2qibA 231 2.32e-18 2iu5A 195 2.36e-18 3cjdA 198 2.62e-18 3cwrA 208 3.04e-18 2o7tA 199 3.16e-18 2nx4A 194 3.43e-18 2gfnA 209 4.37e-18 a.4.1.9,a.121.1.1 135101,135102 1zk8A 183 4.53e-18 a.4.1.9,a.121.1.1 125177,125178 1ui5A 215 4.62e-18 a.4.1.9,a.121.1.1 107856,107857 2vprA 207 4.65e-18 1sgmA 191 7.85e-18 a.4.1.9,a.121.1.1 105537,105538 2jj7A 186 8.31e-18 2q24A 194 9.01e-18 2i10A 202 9.37e-18 a.4.1.9,a.121.1.1 136960,136961 2fx0A 201 1.07e-17 a.4.1.9,a.121.1.1 134269,134270 3bniA 229 1.40e-17 2g3bA 208 1.63e-17 a.4.1.9,a.121.1.1 134558,134559 2o7oA 207 2.12e-17 a.4.1.9,a.121.1.1 138930,138931 3bqyA 209 2.35e-17 2fbqA 235 2.43e-17 a.4.1.9,a.121.1.1 133256,133257 2optA 234 2.96e-17 1a6i 217 4.49e-17 2np5A 203 5.47e-17 a.4.1.9,a.121.1.1 138424,138425 2d6yA 202 7.97e-17 a.4.1.9,a.121.1.1 131313,131314 2oerA 214 8.77e-17 2tct 207 8.95e-17 2g7gA 213 1.02e-16 a.4.1.9,a.121.1.1 134732,134733 3bjbA 207 1.41e-16 1t33A 224 1.81e-16 a.4.1.9,a.121.1.1 106295,106296 2fd5A 180 2.14e-16 a.4.1.9,a.121.1.1 133291,133292 2qkoA 215 2.35e-16 2yveA 185 2.39e-16 2dg8A 193 2.57e-16 2rekA 199 2.76e-16 2eh3A 179 4.84e-16 2guhA 214 5.64e-16 2qwtA 196 5.77e-16 2oi8A 216 7.65e-16 1z0xA 220 2.67e-15 a.4.1.9,a.121.1.1 124334,124335 2hxoA 237 7.95e-15 1v7bA 185 8.38e-15 a.4.1.9,a.121.1.1 119861,119862 2g7lA 243 2.58e-14 a.4.1.9,a.121.1.1 134734,134735 2hkuA 215 1.60e-13 2jn6A 97 3.098 1hlvA 131 3.895 a.4.1.7,a.4.1.7 65854,65855 2hnlA 225 5.745 1ho8A 480 6.024 a.118.1.9 61107 1a0p 290 6.306 1wdcC 156 6.415 a.39.1.5 17317 2on5A 206 6.599 3bkbA 377 8.488 2pvfA 334 8.735 1jlwA 219 9.413 a.45.1.1,c.47.1.5 71741,71742 2pg4A 95 9.828 1xo0A 324 11.18 a.60.9.1,d.163.1.1 115674,115675 3cblA 377 11.31 1oe8A 211 12.39 a.45.1.1,c.47.1.5 86905,86906 1ngkA 128 12.46 a.1.1.1 85673 2rcyA 262 14.52 2ekcA 262 15.26 1cjgA 62 15.59 a.35.1.5 17112 2reiA 318 15.92 1zcbA 362 16.53 a.66.1.1,c.37.1.8 124901,124902 1g8lA 411 16.70 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 1fseA 74 17.57 a.4.6.2 60000 1on2A 142 17.91 a.4.5.24,a.76.1.1 87103,87104 3dbwA 226 17.98 1vbjA 281 18.55 2bjcA 62 18.77 a.35.1.5 128620 1r9oA 477 19.27 a.104.1.1 104878 2gsqA 202 19.92 a.45.1.1,c.47.1.5 17715,33009 3b6hA 498 20.07 2eb2A 334 20.39 1f24A 402 20.99 a.104.1.1 18953 1nhyA 219 21.34 a.45.1.1,c.47.1.5 80520,80521 2e0aA 394 23.59 2q88A 257 23.68 2a2rA 210 24.21 a.45.1.1,c.47.1.5 126058,126059 3b2tA 311 25.08 1w07A 659 27.82 a.29.3.2,a.29.3.2,e.6.1.2 114046,114047,114048 2dt5A 211 29.96 a.4.5.38,c.2.1.12 131708,131709 1f2eA 201 30.59 a.45.1.1,c.47.1.5 17745,33039 1yn9A 169 30.78 1auiB 169 31.22 a.39.1.5 17325 1lufA 343 33.16 d.144.1.7 78223 3c6gA 479 33.74 2ahrA 259 35.26 a.100.1.10,c.2.1.6 126775,126776 1je8A 82 35.76 a.4.6.2 77108 1zljA 78 39.05 1fnsA 196 39.06 c.62.1.1 34136 3chhA 336 40.55 1xcbA 211 40.59 a.4.5.38,c.2.1.12 109552,109553 1gvfA 286 40.63 c.1.10.2 70599 1k3yA 221 43.41 a.45.1.1,c.47.1.5 77245,77246 2v9vA 135 44.58 2dtr 226 44.81 1k2pA 263 46.27 d.144.1.7 72012 2rn7A 108 47.03 2d1eA 248 47.66 1fw1A 216 48.18 a.45.1.1,c.47.1.5 60051,60052 2qolA 376 49.11 1kxuA 333 49.82 a.74.1.1,a.74.1.1 18358,18359 2ii0A 490 49.84 a.117.1.1 137425 1p4wA 99 50.40 a.4.6.2 87783 2o09A 189 50.50 1m0uA 249 51.66 a.45.1.1,c.47.1.5 78359,78360 2fnaA 357 51.72 a.4.5.11,c.37.1.20 133809,133810 2dnxA 130 53.34 2ijmA 281 53.98 2oxoA 103 55.20 1z2cB 383 55.20 a.118.1.23 124377 1s69A 124 55.93 a.1.1.1 105305 2o8xA 70 56.33 2dvzA 314 57.41 2ntoA 201 57.99 1ug3A 339 58.14 a.118.1.14,a.118.1.14 119671,119672 2rfpA 171 58.36 2vc7A 314 58.39 1y1xA 191 59.91 a.39.1.8 116374 1tqnA 486 60.66 a.104.1.1 107238 2pvqA 201 61.25 3ddeA 239 61.51 1nfpA 228 62.50 c.1.16.2 29555 1sedA 117 62.88 a.219.1.1 105449 3d0cA 314 64.72 1xsjA 778 66.04 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 115951,115952,115953,115954 1xo5A 183 67.37 a.39.1.5 115680 1f5nA 592 67.47 a.114.1.1,c.37.1.8 19077,32152 2g0dA 409 67.49 1f3aA 222 68.75 a.45.1.1,c.47.1.5 17701,32995 1jpzA 473 69.18 a.104.1.1 67069 1dlyA 164 69.21 a.1.1.1 14983 2c1mA 424 69.54 1cby 259 69.66 1anfA 370 70.07 c.94.1.1 35776 1u61A 138 70.36 a.149.1.1 107696 2zfoC 147 70.75 2o3fA 111 70.98 1fr2A 86 71.70 a.28.2.1 83256 1emvA 86 73.14 a.28.2.1 16944 1k94A 165 75.78 a.39.1.8 68333 1k0dA 260 75.98 a.45.1.1,c.47.1.5 67930,67931 1f1eA 154 76.36 a.22.1.2 64927 1wdvA 152 77.85 d.116.1.1 114539 2gykA 86 79.80 1svsA 353 80.14 c.37.1.8 106051 1zejA 293 80.38 1oyzA 280 80.43 a.118.1.16 93775 2g3fA 421 81.28 2hiqA 113 82.35 d.58.4.12 136529 2cx5A 158 83.05 2vlqA 86 83.54 1f4qA 165 83.94 a.39.1.8 17360 3bbyA 215 84.34 1vr5A 547 86.48 c.94.1.1 120437 2jmlA 81 87.22 1ciyA 590 87.26 b.18.1.3,b.77.2.1,f.1.3.1 23720,27977,43392 3b2nA 133 87.60 1jlvA 209 88.19 a.45.1.1,c.47.1.5 71729,71730 1x1zA 252 89.08 c.1.2.3 121613 1aw9A 216 89.75 a.45.1.1,c.47.1.5 17736,33030