# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbxA 203 2.31e-17 2f07A 197 5.82e-17 3bcgA 215 9.16e-17 3bhqA 211 1.52e-16 2ibdA 204 1.78e-16 2hyjA 200 1.98e-16 1vi0A 206 2.12e-16 a.4.1.9,a.121.1.1 100720,100721 2genA 197 2.20e-16 a.4.1.9,a.121.1.1 135062,135063 3ccyA 203 2.51e-16 2uxuA 210 3.01e-16 2qtqA 213 3.26e-16 3bruA 222 3.32e-16 2dg7A 195 3.39e-16 3cdlA 203 3.82e-16 1pb6A 212 4.55e-16 a.4.1.9,a.121.1.1 88017,88018 3crjA 199 5.18e-16 2zb9A 214 5.34e-16 2id6A 202 5.38e-16 2rasA 212 5.79e-16 2iekA 200 6.17e-16 2g7sA 194 6.26e-16 a.4.1.9,a.121.1.1 134737,134738 1qvtA 194 7.17e-16 a.4.1.9,a.121.1.1 104602,104603 2fq4A 192 7.45e-16 a.4.1.9,a.121.1.1 133937,133938 3c2bA 221 8.44e-16 2of7A 260 1.36e-15 3b81A 203 1.41e-15 2id3A 225 1.58e-15 a.4.1.9,a.121.1.1 137261,137262 1zkgA 212 1.70e-15 a.4.1.9,a.121.1.1 125194,125195 3cjdA 198 1.84e-15 2iaiA 230 1.91e-15 1jt6A 188 2.08e-15 a.4.1.9,a.121.1.1 67247,67248 3colA 196 2.53e-15 1t56A 216 2.56e-15 a.4.1.9,a.121.1.1 106428,106429 2hytA 197 2.89e-15 1rktA 205 3.00e-15 a.4.1.9,a.121.1.1 97623,97624 2raeA 207 3.41e-15 1z77A 200 4.13e-15 a.4.1.9,a.121.1.1 124588,124589 1sgmA 191 6.19e-15 a.4.1.9,a.121.1.1 105537,105538 2o7tA 199 7.26e-15 2nx4A 194 7.81e-15 2qibA 231 8.16e-15 2qcoA 210 1.09e-14 3cwrA 208 1.11e-14 2jj7A 186 1.12e-14 2gfnA 209 1.12e-14 a.4.1.9,a.121.1.1 135101,135102 2fx0A 201 1.14e-14 a.4.1.9,a.121.1.1 134269,134270 2i10A 202 1.19e-14 a.4.1.9,a.121.1.1 136960,136961 2zcmA 192 1.42e-14 2q24A 194 1.90e-14 1zk8A 183 2.03e-14 a.4.1.9,a.121.1.1 125177,125178 2d6yA 202 3.48e-14 a.4.1.9,a.121.1.1 131313,131314 2g3bA 208 3.54e-14 a.4.1.9,a.121.1.1 134558,134559 2vkeA 208 4.05e-14 2fbqA 235 5.68e-14 a.4.1.9,a.121.1.1 133256,133257 1ui5A 215 6.75e-14 a.4.1.9,a.121.1.1 107856,107857 2iu5A 195 7.44e-14 2vprA 207 1.19e-13 3bniA 229 1.21e-13 2np5A 203 1.54e-13 a.4.1.9,a.121.1.1 138424,138425 1a6i 217 1.84e-13 3bqyA 209 1.88e-13 2oerA 214 2.03e-13 2o7oA 207 2.68e-13 a.4.1.9,a.121.1.1 138930,138931 1t33A 224 2.68e-13 a.4.1.9,a.121.1.1 106295,106296 2qwtA 196 2.78e-13 2optA 234 3.50e-13 2rekA 199 3.69e-13 2dg8A 193 4.91e-13 3bjbA 207 5.19e-13 2guhA 214 7.23e-13 2fd5A 180 7.75e-13 a.4.1.9,a.121.1.1 133291,133292 2eh3A 179 9.14e-13 2yveA 185 1.23e-12 2tct 207 2.35e-12 2g7gA 213 2.86e-12 a.4.1.9,a.121.1.1 134732,134733 2qkoA 215 2.86e-12 2oi8A 216 4.35e-12 1v7bA 185 4.86e-12 a.4.1.9,a.121.1.1 119861,119862 1z0xA 220 5.43e-12 a.4.1.9,a.121.1.1 124334,124335 2g7lA 243 1.65e-11 a.4.1.9,a.121.1.1 134734,134735 2hxoA 237 4.21e-11 2hkuA 215 9.78e-11 2on5A 206 4.297 3bbyA 215 5.293 2gsqA 202 5.757 a.45.1.1,c.47.1.5 17715,33009 1oe8A 211 12.13 a.45.1.1,c.47.1.5 86905,86906 2hnlA 225 19.17 1jlvA 209 19.44 a.45.1.1,c.47.1.5 71729,71730 2jn6A 97 20.50 2a2rA 210 21.38 a.45.1.1,c.47.1.5 126058,126059 2imiA 221 24.37 1htyA 1015 25.28 a.8.3.1,b.30.5.6,c.6.2.1 83064,83065,83066 1jlwA 219 25.39 a.45.1.1,c.47.1.5 71741,71742 1fw1A 216 25.86 a.45.1.1,c.47.1.5 60051,60052 3cbuA 214 27.79 1hlvA 131 28.35 a.4.1.7,a.4.1.7 65854,65855 1tu7A 208 28.57 a.45.1.1,c.47.1.5 112653,112654 1ho8A 480 30.29 a.118.1.9 61107 1f24A 402 32.64 a.104.1.1 18953 1zdyA 307 32.79 d.313.1.1 124961 2pg4A 95 33.66 1k3yA 221 33.86 a.45.1.1,c.47.1.5 77245,77246 1ltqA 301 34.89 c.108.1.9,c.37.1.1 78208,78209 1m0uA 249 36.44 a.45.1.1,c.47.1.5 78359,78360 2q0zX 339 39.46 1uwkA 557 41.19 e.51.1.1 108065 1a0p 290 41.35 1lbkA 208 41.36 a.45.1.1,c.47.1.5 73809,73810 1vf1A 229 41.38 1edg 380 45.21 2cz2A 223 48.83 2pzzA 147 52.50 2oi2A 292 54.31 1f3aA 222 55.26 a.45.1.1,c.47.1.5 17701,32995 2aawA 222 58.60 a.45.1.1,c.47.1.5 126496,126497 1qnrA 344 59.44 c.1.8.3 28834 1tw9A 206 63.00 a.45.1.1,c.47.1.5 107381,107382 1rh9A 373 66.03 c.1.8.3 118773 1fs0G 230 67.01 c.49.2.1 59999 1ciyA 590 67.15 b.18.1.3,b.77.2.1,f.1.3.1 23720,27977,43392 2oxoA 103 69.01 1pgtA 210 69.61 a.45.1.1,c.47.1.5 17515,32809 2hlkA 255 70.68 1qwnA 1045 71.90 a.8.3.1,b.30.5.6,c.6.2.1 96487,96488,96489 1f2eA 201 73.76 a.45.1.1,c.47.1.5 17745,33039 2bk9A 153 75.19 2hsnA 160 75.32 1on2A 142 75.92 a.4.5.24,a.76.1.1 87103,87104 1ny1A 240 78.03 c.6.2.3 86395 2ow6A 1045 78.70 1cby 259 78.75 1ct5A 256 80.68 c.1.6.2 28663 2dh2A 424 82.80 1oktA 211 83.47 a.45.1.1,c.47.1.5 93272,93273 2rn7A 108 88.92