# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbxA 203 1.38e-19 1vi0A 206 4.10e-19 a.4.1.9,a.121.1.1 100720,100721 3ccyA 203 4.70e-19 2ibdA 204 6.02e-19 2f07A 197 7.25e-19 3bhqA 211 7.77e-19 2iekA 200 8.01e-19 1qvtA 194 1.18e-18 a.4.1.9,a.121.1.1 104602,104603 3bcgA 215 1.33e-18 2id6A 202 1.61e-18 3crjA 199 2.09e-18 3bruA 222 2.11e-18 2dg7A 195 2.14e-18 2uxuA 210 2.19e-18 1rktA 205 2.20e-18 a.4.1.9,a.121.1.1 97623,97624 2qtqA 213 2.23e-18 1pb6A 212 2.30e-18 a.4.1.9,a.121.1.1 88017,88018 2hyjA 200 2.84e-18 2g7sA 194 2.90e-18 a.4.1.9,a.121.1.1 134737,134738 2genA 197 3.56e-18 a.4.1.9,a.121.1.1 135062,135063 2rasA 212 3.60e-18 1jt6A 188 3.98e-18 a.4.1.9,a.121.1.1 67247,67248 3cdlA 203 5.39e-18 3c2bA 221 5.64e-18 2zb9A 214 6.46e-18 2fq4A 192 6.49e-18 a.4.1.9,a.121.1.1 133937,133938 3colA 196 6.68e-18 2hytA 197 6.99e-18 1zkgA 212 9.40e-18 a.4.1.9,a.121.1.1 125194,125195 3b81A 203 9.77e-18 2raeA 207 1.11e-17 1z77A 200 1.31e-17 a.4.1.9,a.121.1.1 124588,124589 2zcmA 192 1.44e-17 2iaiA 230 1.50e-17 2qcoA 210 2.07e-17 2of7A 260 2.21e-17 1t56A 216 2.40e-17 a.4.1.9,a.121.1.1 106428,106429 3cjdA 198 2.53e-17 2id3A 225 2.89e-17 a.4.1.9,a.121.1.1 137261,137262 3cwrA 208 2.92e-17 2q24A 194 3.94e-17 2vkeA 208 4.03e-17 1ui5A 215 4.79e-17 a.4.1.9,a.121.1.1 107856,107857 2qibA 231 5.57e-17 2o7tA 199 5.60e-17 1zk8A 183 5.64e-17 a.4.1.9,a.121.1.1 125177,125178 2iu5A 195 5.86e-17 2jj7A 186 5.96e-17 1sgmA 191 7.25e-17 a.4.1.9,a.121.1.1 105537,105538 2d6yA 202 8.57e-17 a.4.1.9,a.121.1.1 131313,131314 2vprA 207 8.82e-17 2nx4A 194 1.06e-16 2fx0A 201 1.09e-16 a.4.1.9,a.121.1.1 134269,134270 2gfnA 209 1.35e-16 a.4.1.9,a.121.1.1 135101,135102 2i10A 202 1.48e-16 a.4.1.9,a.121.1.1 136960,136961 3bqyA 209 1.57e-16 2fbqA 235 1.58e-16 a.4.1.9,a.121.1.1 133256,133257 2o7oA 207 2.21e-16 a.4.1.9,a.121.1.1 138930,138931 3bniA 229 3.33e-16 2g3bA 208 3.51e-16 a.4.1.9,a.121.1.1 134558,134559 3bjbA 207 4.50e-16 2optA 234 5.42e-16 1a6i 217 5.43e-16 2np5A 203 7.75e-16 a.4.1.9,a.121.1.1 138424,138425 2dg8A 193 9.66e-16 1t33A 224 1.44e-15 a.4.1.9,a.121.1.1 106295,106296 2rekA 199 1.49e-15 2tct 207 1.55e-15 2yveA 185 1.56e-15 2g7gA 213 1.60e-15 a.4.1.9,a.121.1.1 134732,134733 2guhA 214 2.21e-15 2qkoA 215 2.47e-15 2oerA 214 3.40e-15 2qwtA 196 3.49e-15 2eh3A 179 4.05e-15 2fd5A 180 4.85e-15 a.4.1.9,a.121.1.1 133291,133292 2oi8A 216 6.54e-15 1z0xA 220 2.55e-14 a.4.1.9,a.121.1.1 124334,124335 1v7bA 185 7.75e-14 a.4.1.9,a.121.1.1 119861,119862 2hxoA 237 1.03e-13 2g7lA 243 3.25e-13 a.4.1.9,a.121.1.1 134734,134735 2hkuA 215 1.17e-12 1hlvA 131 1.680 a.4.1.7,a.4.1.7 65854,65855 2jn6A 97 2.394 1a0p 290 4.942 2pg4A 95 6.498 1on2A 142 6.921 a.4.5.24,a.76.1.1 87103,87104 1vbjA 281 7.271 2on5A 206 7.620 2dt5A 211 8.615 a.4.5.38,c.2.1.12 131708,131709 3ddeA 239 9.948 1xcbA 211 11.46 a.4.5.38,c.2.1.12 109552,109553 2v9vA 135 11.79 2ekcA 262 12.82 1j09A 468 13.01 a.97.1.1,c.26.1.1 77025,77026 2rcyA 262 13.49 1jlwA 219 14.83 a.45.1.1,c.47.1.5 71741,71742 3bkbA 377 16.32 1xo0A 324 16.37 a.60.9.1,d.163.1.1 115674,115675 1cjgA 62 16.72 a.35.1.5 17112 2rn7A 108 17.00 2hnlA 225 18.05 1lvaA 258 20.74 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1wdcC 156 21.20 a.39.1.5 17317 1ho8A 480 21.94 a.118.1.9 61107 1g8lA 411 24.54 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 2bjcA 62 24.64 a.35.1.5 128620 1xsvA 113 24.76 a.4.13.3 116003 1fseA 74 27.98 a.4.6.2 60000 2pvfA 334 28.19 3cbuA 214 28.19 2o09A 189 28.81 2dtr 226 30.07 2r8wA 332 31.94 3bbyA 215 32.74 3dbwA 226 32.82 2eb2A 334 32.83 1f2eA 201 33.61 a.45.1.1,c.47.1.5 17745,33039 1w07A 659 35.77 a.29.3.2,a.29.3.2,e.6.1.2 114046,114047,114048 2o3fA 111 36.13 4crxA 322 36.37 a.60.9.1,d.163.1.1 18095,42155 1f1eA 154 36.58 a.22.1.2 64927 1lufA 343 36.99 d.144.1.7 78223 3cblA 377 38.10 1vr5A 547 38.61 c.94.1.1 120437 1fw1A 216 40.41 a.45.1.1,c.47.1.5 60051,60052 1sedA 117 40.47 a.219.1.1 105449 1jlvA 209 40.56 a.45.1.1,c.47.1.5 71729,71730 1zljA 78 41.33 1m5yA 408 41.84 a.223.1.2,d.26.1.1,d.26.1.1 78664,78665,78666 1m48A 133 41.90 a.26.1.2 74443 1je8A 82 43.34 a.4.6.2 77108 1ct5A 256 45.93 c.1.6.2 28663 2biiA 424 47.54 1ltqA 301 48.25 c.108.1.9,c.37.1.1 78208,78209 1fnsA 196 49.15 c.62.1.1 34136 2q88A 257 49.72 3c6gA 479 50.89 1sfxA 109 52.47 a.4.5.50 105505 1nhyA 219 52.49 a.45.1.1,c.47.1.5 80520,80521 1s7oA 113 53.10 a.4.13.3 105354 2hiqA 113 55.10 d.58.4.12 136529 1s1iG 119 57.79 i.1.1.1 105181 1qqcA 773 57.80 c.55.3.5,e.8.1.1 33724,43013 1anfA 370 58.66 c.94.1.1 35776 2reiA 318 58.90 2fnaA 357 59.09 a.4.5.11,c.37.1.20 133809,133810 1zcbA 362 60.09 a.66.1.1,c.37.1.8 124901,124902 1wdvA 152 60.40 d.116.1.1 114539 2ghaA 382 61.61 1yn9A 169 62.34 2cx5A 158 62.57 2g3fA 421 64.85 2uuiA 156 64.94 1lrrA 131 67.63 d.228.1.1 78165 1a0fA 201 68.45 a.45.1.1,c.47.1.5 17737,33031 1lfkA 398 69.98 a.104.1.1 77926 1s69A 124 70.49 a.1.1.1 105305 1n2aA 201 72.32 a.45.1.1,c.47.1.5 91553,91554 1gkzA 388 75.65 a.29.5.1,d.122.1.4 65268,65269 2hoqA 241 75.91 2imiA 221 76.47 3b2tA 311 76.73 2qolA 376 79.08 1k2pA 263 79.43 d.144.1.7 72012 3bg2A 444 81.27 1w41A 101 83.19 2bo1A 101 85.55 1p4wA 99 87.80 a.4.6.2 87783 1wsuA 124 88.47 a.4.5.35,a.4.5.35 121245,121246 2aifA 135 89.34