# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbxA 203 1.77e-23 1vi0A 206 1.83e-22 a.4.1.9,a.121.1.1 100720,100721 3bhqA 211 2.13e-22 3ccyA 203 2.35e-22 2ibdA 204 2.36e-22 1qvtA 194 2.80e-22 a.4.1.9,a.121.1.1 104602,104603 3bcgA 215 3.34e-22 2f07A 197 3.96e-22 2iekA 200 4.83e-22 3cdlA 203 9.23e-22 2id6A 202 9.95e-22 1pb6A 212 1.22e-21 a.4.1.9,a.121.1.1 88017,88018 3bruA 222 1.32e-21 3crjA 199 1.42e-21 2genA 197 1.50e-21 a.4.1.9,a.121.1.1 135062,135063 1rktA 205 1.61e-21 a.4.1.9,a.121.1.1 97623,97624 2uxuA 210 1.64e-21 2hyjA 200 1.69e-21 2dg7A 195 1.73e-21 2g7sA 194 1.76e-21 a.4.1.9,a.121.1.1 134737,134738 1jt6A 188 2.36e-21 a.4.1.9,a.121.1.1 67247,67248 2qtqA 213 2.44e-21 3c2bA 221 2.56e-21 2rasA 212 2.73e-21 2zb9A 214 4.35e-21 2hytA 197 5.21e-21 2id3A 225 5.71e-21 a.4.1.9,a.121.1.1 137261,137262 2fq4A 192 6.06e-21 a.4.1.9,a.121.1.1 133937,133938 1zkgA 212 8.00e-21 a.4.1.9,a.121.1.1 125194,125195 3colA 196 8.99e-21 3b81A 203 9.11e-21 1t56A 216 9.92e-21 a.4.1.9,a.121.1.1 106428,106429 2raeA 207 1.14e-20 2zcmA 192 1.36e-20 1z77A 200 1.40e-20 a.4.1.9,a.121.1.1 124588,124589 2iaiA 230 1.62e-20 2qcoA 210 1.93e-20 2of7A 260 2.28e-20 2o7tA 199 3.70e-20 3cwrA 208 3.90e-20 3cjdA 198 4.24e-20 2q24A 194 4.66e-20 2jj7A 186 4.96e-20 2qibA 231 5.32e-20 2vkeA 208 5.87e-20 1ui5A 215 7.86e-20 a.4.1.9,a.121.1.1 107856,107857 1zk8A 183 8.16e-20 a.4.1.9,a.121.1.1 125177,125178 2fbqA 235 8.47e-20 a.4.1.9,a.121.1.1 133256,133257 1sgmA 191 1.40e-19 a.4.1.9,a.121.1.1 105537,105538 2iu5A 195 1.48e-19 2nx4A 194 1.48e-19 2vprA 207 1.51e-19 2i10A 202 1.64e-19 a.4.1.9,a.121.1.1 136960,136961 2gfnA 209 1.72e-19 a.4.1.9,a.121.1.1 135101,135102 2fx0A 201 1.75e-19 a.4.1.9,a.121.1.1 134269,134270 3bqyA 209 2.07e-19 2d6yA 202 2.25e-19 a.4.1.9,a.121.1.1 131313,131314 2g3bA 208 2.26e-19 a.4.1.9,a.121.1.1 134558,134559 3bniA 229 8.24e-19 3bjbA 207 9.17e-19 2o7oA 207 1.21e-18 a.4.1.9,a.121.1.1 138930,138931 2optA 234 1.41e-18 1a6i 217 1.83e-18 2np5A 203 2.04e-18 a.4.1.9,a.121.1.1 138424,138425 2rekA 199 3.11e-18 2dg8A 193 4.18e-18 1t33A 224 4.54e-18 a.4.1.9,a.121.1.1 106295,106296 2qwtA 196 5.01e-18 2tct 207 5.21e-18 2g7gA 213 6.41e-18 a.4.1.9,a.121.1.1 134732,134733 2yveA 185 6.49e-18 2oerA 214 6.94e-18 2qkoA 215 1.11e-17 2guhA 214 1.20e-17 2eh3A 179 1.49e-17 2fd5A 180 2.97e-17 a.4.1.9,a.121.1.1 133291,133292 2oi8A 216 4.94e-17 1z0xA 220 5.14e-17 a.4.1.9,a.121.1.1 124334,124335 1v7bA 185 4.77e-16 a.4.1.9,a.121.1.1 119861,119862 2hxoA 237 8.83e-16 2g7lA 243 4.15e-15 a.4.1.9,a.121.1.1 134734,134735 2hkuA 215 8.09e-15 1hlvA 131 1.010 a.4.1.7,a.4.1.7 65854,65855 2jn6A 97 2.533 2scpA 174 3.783 a.39.1.5 17256 1on2A 142 4.563 a.4.5.24,a.76.1.1 87103,87104 2on5A 206 5.179 1jlwA 219 5.708 a.45.1.1,c.47.1.5 71741,71742 3c6gA 479 6.215 2pg4A 95 7.379 3ddeA 239 7.818 2fnaA 357 8.028 a.4.5.11,c.37.1.20 133809,133810 1zejA 293 8.039 2dt5A 211 8.479 a.4.5.38,c.2.1.12 131708,131709 1y1xA 191 8.569 a.39.1.8 116374 1wdcC 156 9.382 a.39.1.5 17317 2dg6A 222 10.54 1mvwC 147 11.70 i.15.1.1 79525 1xd3A 230 12.36 d.3.1.6 115145 1ho8A 480 12.48 a.118.1.9 61107 1riiA 265 13.45 c.60.1.1 111807 2hoqA 241 13.87 2v9vA 135 14.04 3bofA 566 14.07 1lvaA 258 14.48 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1q06A 135 15.11 a.6.1.3 95493 1qs0A 407 15.80 c.36.1.11 31829 2o09A 189 16.80 1xsvA 113 16.94 a.4.13.3 116003 2e9xD 223 17.13 2rcyA 262 17.37 1lufA 343 18.01 d.144.1.7 78223 1ux5A 411 18.08 a.207.1.1 100144 2gsqA 202 18.63 a.45.1.1,c.47.1.5 17715,33009 1z6gA 218 19.17 3cblA 377 19.30 3b6hA 498 19.31 2ab5A 269 19.91 1el4A 195 20.12 a.39.1.5 59453 1cjgA 62 20.34 a.35.1.5 17112 1xo0A 324 20.96 a.60.9.1,d.163.1.1 115674,115675 2hnlA 225 21.27 1zcbA 362 21.76 a.66.1.1,c.37.1.8 124901,124902 2og2A 359 22.13 2ghaA 382 23.64 1phkA 298 23.98 d.144.1.7 41635 1j32A 388 25.12 c.67.1.1 77067 1jlvA 209 25.39 a.45.1.1,c.47.1.5 71729,71730 3cs1A 219 26.02 2pvfA 334 26.15 2bjcA 62 26.92 a.35.1.5 128620 3dbwA 226 27.08 1qqcA 773 27.40 c.55.3.5,e.8.1.1 33724,43013 2pzzA 147 27.88 2eb2A 334 28.65 1fseA 74 28.99 a.4.6.2 60000 2pftA 571 29.01 1gnwA 211 29.24 a.45.1.1,c.47.1.5 17727,33021 1s7oA 113 30.75 a.4.13.3 105354 2fncA 381 32.59 2obhA 143 32.70 1d0cA 444 33.33 d.174.1.1 64769 1qrrA 394 35.21 c.2.1.2 29824 1mhyD 521 35.80 a.25.1.2 16780 1fnsA 196 37.80 c.62.1.1 34136 1m0uA 249 38.93 a.45.1.1,c.47.1.5 78359,78360 1sedA 117 39.08 a.219.1.1 105449 2aaoA 166 40.46 1zy9A 564 40.74 b.30.5.11,c.1.8.13 125813,125814 1w07A 659 41.07 a.29.3.2,a.29.3.2,e.6.1.2 114046,114047,114048 2c5uA 375 41.56 3b2tA 311 41.73 3c4zA 543 41.87 2qguA 211 42.09 2o3fA 111 42.57 1nq7A 244 42.85 a.123.1.1 92047 2jabA 136 43.47 1y9aA 360 44.45 1zljA 78 44.48 2f1sA 186 44.73 1sfxA 109 46.44 a.4.5.50 105505 1g5aA 628 47.57 b.71.1.1,c.1.8.1 65152,65153 1p49A 562 48.55 c.76.1.2 94089 1m48A 133 49.39 a.26.1.2 74443 2vg2A 284 49.63 1r9oA 477 50.37 a.104.1.1 104878 1xkyA 301 50.45 c.1.10.1 122094 2r6gF 514 50.57 2pi6A 361 50.63 1ct5A 256 51.69 c.1.6.2 28663 1uehA 253 51.95 c.101.1.1 99259 2yzqA 282 54.14 1g6aA 271 54.37 e.3.1.1 42704 1f1eA 154 59.40 a.22.1.2 64927 2b0mA 393 60.80 c.1.4.1 127644 1mqiA 263 61.40 c.94.1.1 91398 2q4zA 312 62.36 1qv1A 195 62.41 a.39.1.5 96347 1zmbA 290 63.91 c.23.10.7 125355 1ydnA 295 63.93 1m2oA 768 64.76 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 78480,78481,78482,78483,78484 2bo1A 101 68.76 1s69A 124 68.85 a.1.1.1 105305 2ia2A 265 69.19 3bkbA 377 70.30 2bl0C 142 70.53 1n2aA 201 70.91 a.45.1.1,c.47.1.5 91553,91554 1k77A 260 71.74 c.1.15.5 72096 2hpkA 208 71.85 1zarA 282 72.82 a.4.5.56,d.144.1.9 124843,124844 1mnaA 298 73.26 c.69.1.22 79322 2imiA 221 73.59 8abpA 306 74.39 c.93.1.1 35647 1pcxA 810 74.41 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 94497,94498,94499,94500,94501 2btdA 210 74.61 1oqyA 368 75.76 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1uw4B 248 76.62 a.118.1.14 100072 2f57A 317 76.97 2b81A 323 76.99 1axdA 209 77.39 a.45.1.1,c.47.1.5 17730,33024 1kewA 361 79.65 c.2.1.2 68544 2sas 185 80.05 2a2rA 210 81.20 a.45.1.1,c.47.1.5 126058,126059 2r8wA 332 81.72 2basA 431 81.99 c.1.33.1,d.110.6.2 128244,128245 1a0dA 440 82.17 c.1.15.3 29533 1wtyA 119 82.98 a.24.16.2 114880 1lrrA 131 83.28 d.228.1.1 78165 1vbjA 281 84.18 1f24A 402 84.21 a.104.1.1 18953 1je8A 82 86.55 a.4.6.2 77108 2bnxA 386 87.90 a.118.1.23 128861 1bd8A 156 88.47 d.211.1.1 19157 2uuiA 156 89.15 1s1iG 119 89.17 i.1.1.1 105181 2g5dA 422 89.81