# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbxA 203 4.86e-23 3bcgA 215 1.16e-22 3bhqA 211 1.31e-22 3ccyA 203 2.00e-22 2ibdA 204 3.07e-22 2dg7A 195 3.09e-22 1vi0A 206 3.41e-22 a.4.1.9,a.121.1.1 100720,100721 2f07A 197 4.69e-22 2zb9A 214 4.93e-22 1qvtA 194 5.74e-22 a.4.1.9,a.121.1.1 104602,104603 2iekA 200 5.83e-22 2uxuA 210 5.84e-22 2genA 197 7.63e-22 a.4.1.9,a.121.1.1 135062,135063 3crjA 199 8.06e-22 2hyjA 200 8.44e-22 1rktA 205 1.13e-21 a.4.1.9,a.121.1.1 97623,97624 3cjdA 198 1.29e-21 3bruA 222 1.44e-21 2id6A 202 1.47e-21 2g7sA 194 1.60e-21 a.4.1.9,a.121.1.1 134737,134738 3cdlA 203 1.72e-21 2qtqA 213 1.73e-21 2rasA 212 1.76e-21 2fq4A 192 1.97e-21 a.4.1.9,a.121.1.1 133937,133938 1jt6A 188 2.17e-21 a.4.1.9,a.121.1.1 67247,67248 1pb6A 212 2.33e-21 a.4.1.9,a.121.1.1 88017,88018 2raeA 207 2.46e-21 3c2bA 221 2.81e-21 3b81A 203 3.76e-21 2of7A 260 4.72e-21 3colA 196 6.00e-21 1zkgA 212 7.07e-21 a.4.1.9,a.121.1.1 125194,125195 2hytA 197 7.79e-21 2zcmA 192 8.06e-21 1z77A 200 8.97e-21 a.4.1.9,a.121.1.1 124588,124589 1t56A 216 1.21e-20 a.4.1.9,a.121.1.1 106428,106429 2qcoA 210 1.54e-20 2iaiA 230 1.57e-20 2id3A 225 1.97e-20 a.4.1.9,a.121.1.1 137261,137262 2nx4A 194 2.09e-20 3cwrA 208 2.32e-20 2o7tA 199 2.74e-20 2qibA 231 4.21e-20 2iu5A 195 4.33e-20 2vkeA 208 5.45e-20 2gfnA 209 5.75e-20 a.4.1.9,a.121.1.1 135101,135102 2q24A 194 6.52e-20 1sgmA 191 7.50e-20 a.4.1.9,a.121.1.1 105537,105538 2i10A 202 7.92e-20 a.4.1.9,a.121.1.1 136960,136961 1zk8A 183 8.05e-20 a.4.1.9,a.121.1.1 125177,125178 2jj7A 186 1.03e-19 2fbqA 235 1.05e-19 a.4.1.9,a.121.1.1 133256,133257 1ui5A 215 1.20e-19 a.4.1.9,a.121.1.1 107856,107857 2o7oA 207 1.92e-19 a.4.1.9,a.121.1.1 138930,138931 2vprA 207 2.29e-19 2fx0A 201 2.39e-19 a.4.1.9,a.121.1.1 134269,134270 3bqyA 209 3.52e-19 1a6i 217 3.95e-19 2d6yA 202 5.68e-19 a.4.1.9,a.121.1.1 131313,131314 2g3bA 208 6.39e-19 a.4.1.9,a.121.1.1 134558,134559 3bniA 229 6.52e-19 2np5A 203 1.09e-18 a.4.1.9,a.121.1.1 138424,138425 2optA 234 1.42e-18 2dg8A 193 1.58e-18 2oerA 214 1.70e-18 3bjbA 207 1.78e-18 1t33A 224 2.72e-18 a.4.1.9,a.121.1.1 106295,106296 2guhA 214 3.41e-18 2g7gA 213 3.69e-18 a.4.1.9,a.121.1.1 134732,134733 2tct 207 4.02e-18 2qkoA 215 4.25e-18 2qwtA 196 5.34e-18 2rekA 199 6.79e-18 2yveA 185 7.08e-18 2eh3A 179 1.43e-17 2fd5A 180 1.75e-17 a.4.1.9,a.121.1.1 133291,133292 2oi8A 216 2.33e-17 1z0xA 220 8.81e-17 a.4.1.9,a.121.1.1 124334,124335 1v7bA 185 2.51e-16 a.4.1.9,a.121.1.1 119861,119862 2g7lA 243 1.13e-15 a.4.1.9,a.121.1.1 134734,134735 2hxoA 237 1.21e-15 2hkuA 215 8.30e-15 1hlvA 131 1.750 a.4.1.7,a.4.1.7 65854,65855 2on5A 206 3.451 2jn6A 97 3.481 2dtr 226 3.639 1on2A 142 3.872 a.4.5.24,a.76.1.1 87103,87104 2hnlA 225 5.138 2ekcA 262 6.422 1wdcC 156 8.538 a.39.1.5 17317 1a0p 290 10.20 2eb2A 334 12.22 3bkbA 377 14.49 2r8wA 332 15.20 2pg4A 95 16.15 1jlwA 219 17.17 a.45.1.1,c.47.1.5 71741,71742 1m0uA 249 17.48 a.45.1.1,c.47.1.5 78359,78360 2pvfA 334 17.70 1vbjA 281 19.11 1j09A 468 20.92 a.97.1.1,c.26.1.1 77025,77026 2rfpA 171 21.41 1mvwC 147 23.04 i.15.1.1 79525 1rl0A 255 23.20 d.165.1.1 111859 2rn7A 108 24.26 1bl0A 129 24.99 a.4.1.8,a.4.1.8 16053,16054 2gsqA 202 25.86 a.45.1.1,c.47.1.5 17715,33009 1s1iG 119 25.96 i.1.1.1 105181 2a2rA 210 27.23 a.45.1.1,c.47.1.5 126058,126059 1g8lA 411 27.91 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 1fnsA 196 28.31 c.62.1.1 34136 1ho8A 480 28.34 a.118.1.9 61107 2rcyA 262 29.15 1m48A 133 29.37 a.26.1.2 74443 3cbuA 214 29.89 2dt5A 211 33.51 a.4.5.38,c.2.1.12 131708,131709 3d0cA 314 34.66 1x1zA 252 35.97 c.1.2.3 121613 1lufA 343 36.08 d.144.1.7 78223 2oezA 247 37.08 2v9vA 135 37.38 1vr5A 547 37.50 c.94.1.1 120437 2fnaA 357 37.61 a.4.5.11,c.37.1.20 133809,133810 1xo0A 324 38.37 a.60.9.1,d.163.1.1 115674,115675 1oqyA 368 38.50 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 3cblA 377 39.24 1ijbA 202 40.69 c.62.1.1 71229 1xcbA 211 41.11 a.4.5.38,c.2.1.12 109552,109553 1f2eA 201 41.36 a.45.1.1,c.47.1.5 17745,33039 2aamA 309 42.48 c.1.8.15 126489 3b2tA 311 42.87 2e0aA 394 44.46 1tu7A 208 44.86 a.45.1.1,c.47.1.5 112653,112654 1oe8A 211 44.93 a.45.1.1,c.47.1.5 86905,86906 2hiqA 113 45.17 d.58.4.12 136529 1fw1A 216 45.24 a.45.1.1,c.47.1.5 60051,60052 1nfpA 228 46.51 c.1.16.2 29555 2jmlA 81 48.19 3inkC 133 48.70 a.26.1.2 16881 2ntoA 201 48.83 1fseA 74 49.00 a.4.6.2 60000 1qi7A 253 50.27 d.165.1.1 42210 2pzzA 147 52.24 2o09A 189 52.41 2ehhA 294 52.71 2ahrA 259 53.51 a.100.1.10,c.2.1.6 126775,126776 3c6gA 479 55.10 3chhA 336 57.35 1je8A 82 57.58 a.4.6.2 77108 1a0fA 201 57.64 a.45.1.1,c.47.1.5 17737,33031 2vc7A 314 57.71 1k2pA 263 58.40 d.144.1.7 72012 1sedA 117 61.53 a.219.1.1 105449 2reiA 318 63.12 2fnoA 248 65.07 a.45.1.1,c.47.1.5 133821,133822 2bjcA 62 65.39 a.35.1.5 128620 1cjgA 62 65.93 a.35.1.5 17112 1ct5A 256 66.56 c.1.6.2 28663 2rfgA 297 66.88 1qqcA 773 68.81 c.55.3.5,e.8.1.1 33724,43013 1zljA 78 68.84 1lvaA 258 69.84 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 2aaoA 166 71.69 1n2aA 201 72.57 a.45.1.1,c.47.1.5 91553,91554 1zd8A 227 72.62 1yn9A 169 72.83 2dvzA 314 73.10 2v9dA 343 73.95 1lrvA 244 74.20 a.118.1.5 19146 1w7jB 151 75.89 a.39.1.5 120690 2biiA 424 76.43 2vliA 183 77.25 2ptzA 432 79.03 1y1xA 191 80.68 a.39.1.8 116374 2dh2A 424 80.69 1w07A 659 81.06 a.29.3.2,a.29.3.2,e.6.1.2 114046,114047,114048 2fuqA 747 81.15 1f5nA 592 81.39 a.114.1.1,c.37.1.8 19077,32152 1r1hA 696 81.60 d.92.1.4 104756 3ck6A 252 84.39 1h4pA 408 85.73 c.1.8.3 90617 1resA 43 86.04 a.4.1.2 16023 2q88A 257 86.64 4crxA 322 87.32 a.60.9.1,d.163.1.1 18095,42155 1pxwA 128 87.82 d.79.3.1 95305