# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbxA 203 2.19e-21 3bcgA 215 5.05e-21 3bhqA 211 5.69e-21 2ibdA 204 8.21e-21 3ccyA 203 8.70e-21 2f07A 197 1.10e-20 1qvtA 194 1.23e-20 a.4.1.9,a.121.1.1 104602,104603 2zb9A 214 1.46e-20 2iekA 200 1.55e-20 2uxuA 210 1.76e-20 1vi0A 206 1.84e-20 a.4.1.9,a.121.1.1 100720,100721 2genA 197 2.06e-20 a.4.1.9,a.121.1.1 135062,135063 1rktA 205 2.10e-20 a.4.1.9,a.121.1.1 97623,97624 3crjA 199 2.58e-20 2id6A 202 2.60e-20 2hyjA 200 2.82e-20 2qtqA 213 3.24e-20 2dg7A 195 3.27e-20 3bruA 222 4.37e-20 3cjdA 198 4.43e-20 2g7sA 194 4.70e-20 a.4.1.9,a.121.1.1 134737,134738 1jt6A 188 4.80e-20 a.4.1.9,a.121.1.1 67247,67248 1pb6A 212 4.81e-20 a.4.1.9,a.121.1.1 88017,88018 3cdlA 203 5.03e-20 3c2bA 221 5.84e-20 2fq4A 192 6.84e-20 a.4.1.9,a.121.1.1 133937,133938 2rasA 212 7.08e-20 3b81A 203 7.75e-20 2raeA 207 8.17e-20 1zkgA 212 1.15e-19 a.4.1.9,a.121.1.1 125194,125195 1z77A 200 1.68e-19 a.4.1.9,a.121.1.1 124588,124589 2hytA 197 1.83e-19 2of7A 260 1.91e-19 3colA 196 1.99e-19 2zcmA 192 2.48e-19 2id3A 225 2.68e-19 a.4.1.9,a.121.1.1 137261,137262 2iaiA 230 2.88e-19 1t56A 216 3.21e-19 a.4.1.9,a.121.1.1 106428,106429 2qcoA 210 3.65e-19 3cwrA 208 5.17e-19 2nx4A 194 5.87e-19 2gfnA 209 7.40e-19 a.4.1.9,a.121.1.1 135101,135102 2o7tA 199 7.95e-19 2vkeA 208 1.05e-18 2q24A 194 1.07e-18 2jj7A 186 1.17e-18 1ui5A 215 1.28e-18 a.4.1.9,a.121.1.1 107856,107857 2qibA 231 1.30e-18 1sgmA 191 1.48e-18 a.4.1.9,a.121.1.1 105537,105538 2iu5A 195 1.69e-18 1zk8A 183 1.69e-18 a.4.1.9,a.121.1.1 125177,125178 2i10A 202 1.81e-18 a.4.1.9,a.121.1.1 136960,136961 2fbqA 235 1.83e-18 a.4.1.9,a.121.1.1 133256,133257 2fx0A 201 2.14e-18 a.4.1.9,a.121.1.1 134269,134270 2vprA 207 2.46e-18 3bqyA 209 4.13e-18 2o7oA 207 4.27e-18 a.4.1.9,a.121.1.1 138930,138931 3bniA 229 6.09e-18 1a6i 217 7.44e-18 2d6yA 202 7.50e-18 a.4.1.9,a.121.1.1 131313,131314 2g3bA 208 8.84e-18 a.4.1.9,a.121.1.1 134558,134559 2optA 234 1.06e-17 2np5A 203 2.04e-17 a.4.1.9,a.121.1.1 138424,138425 3bjbA 207 2.05e-17 1t33A 224 2.61e-17 a.4.1.9,a.121.1.1 106295,106296 2dg8A 193 3.31e-17 2oerA 214 3.69e-17 2qwtA 196 5.78e-17 2g7gA 213 6.07e-17 a.4.1.9,a.121.1.1 134732,134733 2tct 207 6.35e-17 2rekA 199 7.84e-17 2yveA 185 8.95e-17 2qkoA 215 9.60e-17 2guhA 214 1.18e-16 2eh3A 179 1.57e-16 2oi8A 216 1.64e-16 2fd5A 180 2.36e-16 a.4.1.9,a.121.1.1 133291,133292 1z0xA 220 7.33e-16 a.4.1.9,a.121.1.1 124334,124335 1v7bA 185 2.86e-15 a.4.1.9,a.121.1.1 119861,119862 2g7lA 243 8.71e-15 a.4.1.9,a.121.1.1 134734,134735 2hxoA 237 9.96e-15 2hkuA 215 4.67e-14 1hlvA 131 1.207 a.4.1.7,a.4.1.7 65854,65855 2jn6A 97 1.250 1on2A 142 2.260 a.4.5.24,a.76.1.1 87103,87104 2hnlA 225 2.759 1a0p 290 5.140 2pg4A 95 6.122 2rn7A 108 6.640 1xcbA 211 7.734 a.4.5.38,c.2.1.12 109552,109553 2on5A 206 7.963 1ho8A 480 8.211 a.118.1.9 61107 2dt5A 211 8.627 a.4.5.38,c.2.1.12 131708,131709 1wdcC 156 10.99 a.39.1.5 17317 2eb2A 334 13.02 1fseA 74 13.68 a.4.6.2 60000 2rcyA 262 13.99 1vbjA 281 14.81 2ekcA 262 15.97 1zljA 78 16.41 1je8A 82 16.52 a.4.6.2 77108 2dtr 226 17.59 3bkbA 377 18.65 2pvfA 334 19.37 2r8wA 332 20.56 1xo0A 324 21.28 a.60.9.1,d.163.1.1 115674,115675 2ahrA 259 21.31 a.100.1.10,c.2.1.6 126775,126776 1m0uA 249 22.36 a.45.1.1,c.47.1.5 78359,78360 2fnaA 357 22.53 a.4.5.11,c.37.1.20 133809,133810 1oe8A 211 23.72 a.45.1.1,c.47.1.5 86905,86906 1lvaA 258 24.86 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1j09A 468 24.87 a.97.1.1,c.26.1.1 77025,77026 2a2rA 210 24.92 a.45.1.1,c.47.1.5 126058,126059 1sedA 117 24.95 a.219.1.1 105449 2v9vA 135 24.98 1f2eA 201 27.49 a.45.1.1,c.47.1.5 17745,33039 3cbuA 214 28.31 2bjcA 62 29.00 a.35.1.5 128620 1g8lA 411 29.11 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 2o09A 189 31.08 1cjgA 62 31.27 a.35.1.5 17112 2biiA 424 32.32 2jmlA 81 33.72 1p4wA 99 33.78 a.4.6.2 87783 1w07A 659 35.49 a.29.3.2,a.29.3.2,e.6.1.2 114046,114047,114048 2e0aA 394 35.86 3c6gA 479 38.59 1fw1A 216 39.30 a.45.1.1,c.47.1.5 60051,60052 3chhA 336 39.35 2rfpA 171 39.41 1m48A 133 41.10 a.26.1.2 74443 1fnsA 196 41.10 c.62.1.1 34136 1rl0A 255 41.27 d.165.1.1 111859 3cblA 377 41.50 2ntoA 201 43.95 3bbyA 215 44.00 1gvfA 286 44.87 c.1.10.2 70599 2ptzA 432 44.91 2dvzA 314 46.64 3inkC 133 47.65 a.26.1.2 16881 1s7oA 113 48.61 a.4.13.3 105354 1zd8A 227 49.45 1lufA 343 52.05 d.144.1.7 78223 1sfxA 109 54.10 a.4.5.50 105505 1x1zA 252 54.95 c.1.2.3 121613 2reiA 318 55.91 1a0fA 201 56.70 a.45.1.1,c.47.1.5 17737,33031 2fuqA 747 57.11 2q0zX 339 58.07 1xsvA 113 58.28 a.4.13.3 116003 1bl0A 129 59.77 a.4.1.8,a.4.1.8 16053,16054 1f24A 402 60.56 a.104.1.1 18953 1zcbA 362 61.04 a.66.1.1,c.37.1.8 124901,124902 3b2tA 311 61.75 1n2aA 201 67.13 a.45.1.1,c.47.1.5 91553,91554 1resA 43 67.84 a.4.1.2 16023 2qolA 376 68.60 2gsqA 202 70.14 a.45.1.1,c.47.1.5 17715,33009 1tu7A 208 70.43 a.45.1.1,c.47.1.5 112653,112654 1jlwA 219 71.97 a.45.1.1,c.47.1.5 71741,71742 2hiqA 113 74.73 d.58.4.12 136529 2oezA 247 75.28 2gv5A 161 76.81 1ntyA 311 76.95 a.87.1.1,b.55.1.1 103873,103874 1mvwC 147 77.19 i.15.1.1 79525 1ltqA 301 77.50 c.108.1.9,c.37.1.1 78208,78209 2f5xA 312 82.66 1yqgA 263 84.36 1oqyA 368 86.73 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1k3yA 221 87.50 a.45.1.1,c.47.1.5 77245,77246 2scpA 174 87.92 a.39.1.5 17256 1qi7A 253 89.09 d.165.1.1 42210 1s1iG 119 89.16 i.1.1.1 105181 2imiA 221 89.93