# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbxA 203 1.65e-20 3bhqA 211 5.95e-20 3bcgA 215 8.14e-20 2ibdA 204 1.31e-19 2f07A 197 1.32e-19 3ccyA 203 1.42e-19 1vi0A 206 1.55e-19 a.4.1.9,a.121.1.1 100720,100721 2zb9A 214 1.63e-19 2iekA 200 1.75e-19 1qvtA 194 1.76e-19 a.4.1.9,a.121.1.1 104602,104603 2dg7A 195 1.77e-19 2uxuA 210 1.97e-19 2qtqA 213 2.16e-19 2genA 197 2.41e-19 a.4.1.9,a.121.1.1 135062,135063 3crjA 199 2.50e-19 1rktA 205 2.57e-19 a.4.1.9,a.121.1.1 97623,97624 2id6A 202 2.89e-19 2hyjA 200 2.94e-19 3bruA 222 3.61e-19 2g7sA 194 4.78e-19 a.4.1.9,a.121.1.1 134737,134738 1pb6A 212 4.83e-19 a.4.1.9,a.121.1.1 88017,88018 1jt6A 188 4.86e-19 a.4.1.9,a.121.1.1 67247,67248 1zkgA 212 5.08e-19 a.4.1.9,a.121.1.1 125194,125195 2rasA 212 5.25e-19 3cjdA 198 5.96e-19 3c2bA 221 6.55e-19 2fq4A 192 6.88e-19 a.4.1.9,a.121.1.1 133937,133938 3cdlA 203 7.10e-19 2raeA 207 9.07e-19 3b81A 203 1.05e-18 2of7A 260 1.53e-18 3colA 196 1.69e-18 1z77A 200 1.76e-18 a.4.1.9,a.121.1.1 124588,124589 2hytA 197 1.89e-18 2zcmA 192 2.03e-18 1t56A 216 2.93e-18 a.4.1.9,a.121.1.1 106428,106429 2id3A 225 4.41e-18 a.4.1.9,a.121.1.1 137261,137262 2iaiA 230 4.70e-18 2o7tA 199 5.24e-18 3cwrA 208 5.29e-18 2nx4A 194 5.92e-18 2qibA 231 6.17e-18 2vkeA 208 6.48e-18 2iu5A 195 7.19e-18 2qcoA 210 7.33e-18 2gfnA 209 7.71e-18 a.4.1.9,a.121.1.1 135101,135102 2q24A 194 9.48e-18 2jj7A 186 1.03e-17 2i10A 202 1.07e-17 a.4.1.9,a.121.1.1 136960,136961 1ui5A 215 1.16e-17 a.4.1.9,a.121.1.1 107856,107857 1zk8A 183 1.25e-17 a.4.1.9,a.121.1.1 125177,125178 1sgmA 191 1.34e-17 a.4.1.9,a.121.1.1 105537,105538 2vprA 207 1.61e-17 2fbqA 235 2.18e-17 a.4.1.9,a.121.1.1 133256,133257 2fx0A 201 2.58e-17 a.4.1.9,a.121.1.1 134269,134270 2o7oA 207 3.49e-17 a.4.1.9,a.121.1.1 138930,138931 3bqyA 209 3.71e-17 3bniA 229 4.53e-17 1a6i 217 4.98e-17 2g3bA 208 5.51e-17 a.4.1.9,a.121.1.1 134558,134559 2optA 234 7.79e-17 2d6yA 202 9.06e-17 a.4.1.9,a.121.1.1 131313,131314 3bjbA 207 1.38e-16 2np5A 203 1.39e-16 a.4.1.9,a.121.1.1 138424,138425 2oerA 214 1.65e-16 2dg8A 193 1.97e-16 1t33A 224 2.66e-16 a.4.1.9,a.121.1.1 106295,106296 2g7gA 213 3.25e-16 a.4.1.9,a.121.1.1 134732,134733 2tct 207 4.06e-16 2guhA 214 4.06e-16 2yveA 185 4.09e-16 2rekA 199 4.17e-16 2qwtA 196 4.88e-16 2qkoA 215 5.11e-16 2eh3A 179 1.17e-15 2oi8A 216 1.28e-15 2fd5A 180 1.31e-15 a.4.1.9,a.121.1.1 133291,133292 1z0xA 220 3.08e-15 a.4.1.9,a.121.1.1 124334,124335 1v7bA 185 1.08e-14 a.4.1.9,a.121.1.1 119861,119862 2g7lA 243 3.49e-14 a.4.1.9,a.121.1.1 134734,134735 2hxoA 237 6.97e-14 2hkuA 215 2.51e-13 2jn6A 97 1.491 1hlvA 131 1.508 a.4.1.7,a.4.1.7 65854,65855 1on2A 142 3.252 a.4.5.24,a.76.1.1 87103,87104 2hnlA 225 3.761 1a0p 290 5.764 2on5A 206 6.226 2pg4A 95 6.705 1xcbA 211 7.290 a.4.5.38,c.2.1.12 109552,109553 1wdcC 156 7.665 a.39.1.5 17317 2dt5A 211 7.732 a.4.5.38,c.2.1.12 131708,131709 2dtr 226 8.198 2rcyA 262 8.280 2rn7A 108 8.937 1ho8A 480 13.76 a.118.1.9 61107 1cjgA 62 15.09 a.35.1.5 17112 1fseA 74 15.88 a.4.6.2 60000 1xo0A 324 17.06 a.60.9.1,d.163.1.1 115674,115675 3bkbA 377 18.35 2bjcA 62 18.67 a.35.1.5 128620 1je8A 82 19.17 a.4.6.2 77108 1zljA 78 22.02 1vbjA 281 22.03 1jlwA 219 22.03 a.45.1.1,c.47.1.5 71741,71742 1m48A 133 22.71 a.26.1.2 74443 1oe8A 211 23.01 a.45.1.1,c.47.1.5 86905,86906 1j09A 468 24.12 a.97.1.1,c.26.1.1 77025,77026 1w07A 659 26.19 a.29.3.2,a.29.3.2,e.6.1.2 114046,114047,114048 1f2eA 201 26.47 a.45.1.1,c.47.1.5 17745,33039 1p4wA 99 26.71 a.4.6.2 87783 2v9vA 135 27.37 2fnaA 357 28.73 a.4.5.11,c.37.1.20 133809,133810 1zcbA 362 29.40 a.66.1.1,c.37.1.8 124901,124902 2a2rA 210 29.53 a.45.1.1,c.47.1.5 126058,126059 2ahrA 259 29.55 a.100.1.10,c.2.1.6 126775,126776 1m0uA 249 30.63 a.45.1.1,c.47.1.5 78359,78360 2ekcA 262 31.03 3c6gA 479 31.21 2eb2A 334 31.39 2r8wA 332 32.36 2e0aA 394 32.93 1x1zA 252 34.33 c.1.2.3 121613 1lvaA 258 34.80 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1sedA 117 34.85 a.219.1.1 105449 1r9oA 477 36.46 a.104.1.1 104878 1resA 43 38.56 a.4.1.2 16023 2biiA 424 38.90 2dvzA 314 40.46 1hcrA 52 42.03 a.4.1.2 16020 1fw1A 216 42.15 a.45.1.1,c.47.1.5 60051,60052 2pvfA 334 43.83 1sfxA 109 44.06 a.4.5.50 105505 1rl0A 255 46.06 d.165.1.1 111859 2hiqA 113 47.09 d.58.4.12 136529 3cblA 377 47.95 4crxA 322 49.06 a.60.9.1,d.163.1.1 18095,42155 1xsvA 113 49.09 a.4.13.3 116003 3chhA 336 49.17 1f24A 402 52.49 a.104.1.1 18953 1g8lA 411 52.82 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 3dbwA 226 53.08 3cbuA 214 53.46 2jmlA 81 53.60 2zfoC 147 54.48 2rfpA 171 54.85 1y1xA 191 55.17 a.39.1.8 116374 1ngkA 128 57.01 a.1.1.1 85673 1lufA 343 57.05 d.144.1.7 78223 2q88A 257 57.82 1a0fA 201 59.88 a.45.1.1,c.47.1.5 17737,33031 3bbyA 215 60.15 1s7oA 113 61.24 a.4.13.3 105354 1anfA 370 63.20 c.94.1.1 35776 1bl0A 129 65.26 a.4.1.8,a.4.1.8 16053,16054 2ntoA 201 66.44 2f5xA 312 67.54 1auiB 169 67.55 a.39.1.5 17325 2qolA 376 67.74 1m5yA 408 70.39 a.223.1.2,d.26.1.1,d.26.1.1 78664,78665,78666 1n2aA 201 70.56 a.45.1.1,c.47.1.5 91553,91554 2imiA 221 70.71 1wdvA 152 71.10 d.116.1.1 114539 2reiA 318 71.31 1yqgA 263 71.39 2d1eA 248 72.18 1zd8A 227 72.56 2o09A 189 74.55 2cx5A 158 75.87 2bl0B 145 76.02 1qi7A 253 76.68 d.165.1.1 42210 2o8xA 70 78.15 3inkC 133 80.19 a.26.1.2 16881 1mvwC 147 80.25 i.15.1.1 79525 1gvfA 286 82.67 c.1.10.2 70599 2gsqA 202 83.86 a.45.1.1,c.47.1.5 17715,33009 1s1iG 119 84.39 i.1.1.1 105181 2vc7A 314 84.74 1fnsA 196 85.03 c.62.1.1 34136 1k3yA 221 85.81 a.45.1.1,c.47.1.5 77245,77246 1xo5A 183 86.09 a.39.1.5 115680 3d0cA 314 86.40 2qpqA 301 88.31 3b2tA 311 89.48