# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3bcgA 215 2.52e-18 2pbxA 203 3.05e-18 3bhqA 211 3.41e-18 2f07A 197 1.14e-17 2uxuA 210 1.39e-17 2hyjA 200 1.76e-17 2dg7A 195 1.98e-17 3ccyA 203 2.43e-17 2zb9A 214 2.49e-17 1vi0A 206 2.64e-17 a.4.1.9,a.121.1.1 100720,100721 2genA 197 3.02e-17 a.4.1.9,a.121.1.1 135062,135063 2ibdA 204 3.77e-17 1pb6A 212 3.95e-17 a.4.1.9,a.121.1.1 88017,88018 3crjA 199 5.41e-17 2of7A 260 5.55e-17 2qtqA 213 5.69e-17 2fq4A 192 6.49e-17 a.4.1.9,a.121.1.1 133937,133938 3bruA 222 6.98e-17 2id3A 225 7.18e-17 a.4.1.9,a.121.1.1 137261,137262 2id6A 202 7.84e-17 3colA 196 8.46e-17 1qvtA 194 8.95e-17 a.4.1.9,a.121.1.1 104602,104603 2rasA 212 9.22e-17 2raeA 207 9.62e-17 3cdlA 203 1.00e-16 2g7sA 194 1.07e-16 a.4.1.9,a.121.1.1 134737,134738 3c2bA 221 1.21e-16 1rktA 205 1.36e-16 a.4.1.9,a.121.1.1 97623,97624 2iekA 200 1.80e-16 1t56A 216 1.94e-16 a.4.1.9,a.121.1.1 106428,106429 1zkgA 212 2.45e-16 a.4.1.9,a.121.1.1 125194,125195 3b81A 203 2.64e-16 2hytA 197 2.90e-16 2gfnA 209 3.22e-16 a.4.1.9,a.121.1.1 135101,135102 3cjdA 198 3.51e-16 2iaiA 230 3.65e-16 1jt6A 188 3.79e-16 a.4.1.9,a.121.1.1 67247,67248 2nx4A 194 6.39e-16 2qibA 231 6.53e-16 1z77A 200 7.21e-16 a.4.1.9,a.121.1.1 124588,124589 3cwrA 208 7.60e-16 1sgmA 191 8.14e-16 a.4.1.9,a.121.1.1 105537,105538 2q24A 194 9.28e-16 2o7tA 199 1.02e-15 2fbqA 235 1.07e-15 a.4.1.9,a.121.1.1 133256,133257 2qcoA 210 1.12e-15 2i10A 202 1.40e-15 a.4.1.9,a.121.1.1 136960,136961 2zcmA 192 1.79e-15 1ui5A 215 1.99e-15 a.4.1.9,a.121.1.1 107856,107857 2jj7A 186 3.53e-15 2fx0A 201 4.09e-15 a.4.1.9,a.121.1.1 134269,134270 1a6i 217 4.48e-15 1zk8A 183 4.83e-15 a.4.1.9,a.121.1.1 125177,125178 2np5A 203 4.92e-15 a.4.1.9,a.121.1.1 138424,138425 2o7oA 207 5.08e-15 a.4.1.9,a.121.1.1 138930,138931 2vkeA 208 5.71e-15 2d6yA 202 7.79e-15 a.4.1.9,a.121.1.1 131313,131314 2iu5A 195 8.27e-15 3bqyA 209 9.18e-15 2vprA 207 1.23e-14 2g3bA 208 1.74e-14 a.4.1.9,a.121.1.1 134558,134559 2dg8A 193 2.65e-14 2qwtA 196 2.91e-14 1t33A 224 2.96e-14 a.4.1.9,a.121.1.1 106295,106296 2oerA 214 3.34e-14 3bjbA 207 3.41e-14 3bniA 229 4.23e-14 2fd5A 180 5.29e-14 a.4.1.9,a.121.1.1 133291,133292 2guhA 214 5.70e-14 2optA 234 1.05e-13 2rekA 199 1.92e-13 2qkoA 215 2.40e-13 2g7gA 213 2.95e-13 a.4.1.9,a.121.1.1 134732,134733 2tct 207 3.83e-13 2yveA 185 6.52e-13 2oi8A 216 9.27e-13 1z0xA 220 1.03e-12 a.4.1.9,a.121.1.1 124334,124335 2eh3A 179 1.18e-12 2hxoA 237 4.34e-12 1v7bA 185 8.23e-12 a.4.1.9,a.121.1.1 119861,119862 2g7lA 243 1.11e-11 a.4.1.9,a.121.1.1 134734,134735 2hkuA 215 1.88e-10 2imiA 221 5.774 2on5A 206 6.807 2gsoA 393 11.08 2hnlA 225 11.48 1tu7A 208 16.31 a.45.1.1,c.47.1.5 112653,112654 1oe8A 211 16.40 a.45.1.1,c.47.1.5 86905,86906 1ho8A 480 21.23 a.118.1.9 61107 1jlwA 219 22.55 a.45.1.1,c.47.1.5 71741,71742 2pw6A 271 23.69 3bbyA 215 24.51 3cbuA 214 24.83 1oyjA 231 26.61 a.45.1.1,c.47.1.5 87597,87598 1uwkA 557 28.22 e.51.1.1 108065 1aw9A 216 30.73 a.45.1.1,c.47.1.5 17736,33030 2oxoA 103 34.36 1ciyA 590 35.99 b.18.1.3,b.77.2.1,f.1.3.1 23720,27977,43392 1vf1A 229 36.05 1nhyA 219 37.24 a.45.1.1,c.47.1.5 80520,80521 1edg 380 37.90 1f0cA 305 38.13 e.1.1.1 42676 1mqiA 263 39.12 c.94.1.1 91398 1dlcA 584 39.71 b.18.1.3,b.77.2.1,f.1.3.1 23719,27976,43391 1v2aA 210 40.91 a.45.1.1,c.47.1.5 100263,100264 1u0mA 382 41.09 c.95.1.2,c.95.1.2 107557,107558 1ciy 590 41.92 2qxlA 658 43.43 1bupA 386 45.43 c.55.1.1,c.55.1.1 33377,33378 2gsqA 202 46.64 a.45.1.1,c.47.1.5 17715,33009 1jlvA 209 51.80 a.45.1.1,c.47.1.5 71729,71730 1uuqA 440 53.56 c.1.8.3 100015 2scpA 174 59.28 a.39.1.5 17256 2hlkA 255 61.13 2aamA 309 61.24 c.1.8.15 126489 2a2rA 210 62.20 a.45.1.1,c.47.1.5 126058,126059 2hwjA 205 62.79 1qnrA 344 63.50 c.1.8.3 28834 2ntoA 201 67.93 1lbkA 208 71.85 a.45.1.1,c.47.1.5 73809,73810 1huxA 270 74.96 c.55.1.5 61278 1dmtA 696 75.27 d.92.1.4 40296 1rh9A 373 76.92 c.1.8.3 118773 1f24A 402 82.08 a.104.1.1 18953 1tvzA 388 83.32 c.95.1.2,c.95.1.2 107367,107368 1axdA 209 83.86 a.45.1.1,c.47.1.5 17730,33024 1bi5A 389 87.46 c.95.1.2,c.95.1.2 35985,35986 1uayA 242 88.27 c.2.1.2 88390