# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbxA 203 7.98e-24 3bcgA 215 4.00e-23 3ccyA 203 4.57e-23 2ibdA 204 5.69e-23 3bhqA 211 7.30e-23 2f07A 197 7.83e-23 1vi0A 206 1.84e-22 a.4.1.9,a.121.1.1 100720,100721 2uxuA 210 1.84e-22 2dg7A 195 1.86e-22 2genA 197 2.62e-22 a.4.1.9,a.121.1.1 135062,135063 3crjA 199 3.47e-22 2g7sA 194 3.51e-22 a.4.1.9,a.121.1.1 134737,134738 2hyjA 200 3.80e-22 1pb6A 212 4.17e-22 a.4.1.9,a.121.1.1 88017,88018 1qvtA 194 4.48e-22 a.4.1.9,a.121.1.1 104602,104603 2rasA 212 4.48e-22 3cdlA 203 6.25e-22 2iekA 200 6.31e-22 3bruA 222 6.35e-22 2qtqA 213 7.20e-22 2id6A 202 9.04e-22 2raeA 207 9.53e-22 3cjdA 198 1.10e-21 2zb9A 214 1.28e-21 3colA 196 1.43e-21 1jt6A 188 1.78e-21 a.4.1.9,a.121.1.1 67247,67248 1rktA 205 1.86e-21 a.4.1.9,a.121.1.1 97623,97624 2fq4A 192 2.48e-21 a.4.1.9,a.121.1.1 133937,133938 3b81A 203 2.73e-21 3c2bA 221 2.83e-21 2hytA 197 3.78e-21 2of7A 260 3.98e-21 2iaiA 230 4.72e-21 1t56A 216 6.05e-21 a.4.1.9,a.121.1.1 106428,106429 2nx4A 194 6.88e-21 1z77A 200 8.43e-21 a.4.1.9,a.121.1.1 124588,124589 2id3A 225 9.99e-21 a.4.1.9,a.121.1.1 137261,137262 2zcmA 192 1.28e-20 2gfnA 209 1.39e-20 a.4.1.9,a.121.1.1 135101,135102 2o7tA 199 1.61e-20 2qibA 231 1.81e-20 1zkgA 212 1.90e-20 a.4.1.9,a.121.1.1 125194,125195 2jj7A 186 2.77e-20 2qcoA 210 2.90e-20 2q24A 194 3.36e-20 3cwrA 208 3.71e-20 2i10A 202 7.11e-20 a.4.1.9,a.121.1.1 136960,136961 1sgmA 191 7.84e-20 a.4.1.9,a.121.1.1 105537,105538 2fbqA 235 1.09e-19 a.4.1.9,a.121.1.1 133256,133257 1ui5A 215 1.35e-19 a.4.1.9,a.121.1.1 107856,107857 1zk8A 183 1.55e-19 a.4.1.9,a.121.1.1 125177,125178 2d6yA 202 1.56e-19 a.4.1.9,a.121.1.1 131313,131314 2vkeA 208 2.06e-19 2np5A 203 2.09e-19 a.4.1.9,a.121.1.1 138424,138425 2fx0A 201 2.25e-19 a.4.1.9,a.121.1.1 134269,134270 3bniA 229 2.34e-19 2iu5A 195 2.43e-19 1a6i 217 2.99e-19 3bqyA 209 3.20e-19 2o7oA 207 3.28e-19 a.4.1.9,a.121.1.1 138930,138931 2vprA 207 3.69e-19 2g3bA 208 3.92e-19 a.4.1.9,a.121.1.1 134558,134559 2qwtA 196 2.09e-18 2dg8A 193 2.22e-18 2guhA 214 2.27e-18 2oerA 214 3.08e-18 2optA 234 3.09e-18 3bjbA 207 3.50e-18 2qkoA 215 3.53e-18 2fd5A 180 3.59e-18 a.4.1.9,a.121.1.1 133291,133292 1t33A 224 3.62e-18 a.4.1.9,a.121.1.1 106295,106296 2yveA 185 7.88e-18 2rekA 199 1.24e-17 2eh3A 179 1.99e-17 2oi8A 216 2.30e-17 2tct 207 2.96e-17 2g7gA 213 2.98e-17 a.4.1.9,a.121.1.1 134732,134733 1z0xA 220 6.50e-17 a.4.1.9,a.121.1.1 124334,124335 1v7bA 185 2.94e-16 a.4.1.9,a.121.1.1 119861,119862 2g7lA 243 9.27e-16 a.4.1.9,a.121.1.1 134734,134735 2hxoA 237 1.86e-15 2hkuA 215 1.55e-14 2pzzA 147 3.521 2on5A 206 3.840 1a0p 290 7.771 2hnlA 225 9.144 1jlwA 219 13.60 a.45.1.1,c.47.1.5 71741,71742 1w99A 558 15.74 2jn6A 97 16.13 2vliA 183 16.20 2r8wA 332 18.45 2v9vA 135 19.81 1xo0A 324 20.22 a.60.9.1,d.163.1.1 115674,115675 2oxoA 103 20.23 1dlcA 584 20.90 b.18.1.3,b.77.2.1,f.1.3.1 23719,27976,43391 1on2A 142 21.87 a.4.5.24,a.76.1.1 87103,87104 2dtr 226 26.27 1f44A 324 27.23 a.60.9.1,d.163.1.1 64982,64983 1h3fA 432 28.04 c.26.1.1,d.66.1.4 76631,76632 3d0cA 314 29.50 1bxeA 113 32.14 d.55.1.1 38898 2e9xD 223 33.38 1wdcC 156 35.32 a.39.1.5 17317 1i6xA 209 35.39 a.4.5.4,b.82.3.2 83673,83674 1hlvA 131 37.36 a.4.1.7,a.4.1.7 65854,65855 2ehhA 294 39.64 1hw5A 210 39.67 a.4.5.4,b.82.3.2 16098,28137 1oe8A 211 40.23 a.45.1.1,c.47.1.5 86905,86906 1dmtA 696 40.25 d.92.1.4 40296 2pg4A 95 42.70 1ltqA 301 43.18 c.108.1.9,c.37.1.1 78208,78209 2gsqA 202 44.32 a.45.1.1,c.47.1.5 17715,33009 2cstA 411 45.26 c.67.1.1 34273 1vs5C 233 50.61 1mqiA 263 51.55 c.94.1.1 91398 1r9oA 477 54.02 a.104.1.1 104878 1f24A 402 55.20 a.104.1.1 18953 2yxoA 267 55.99 1kcfA 258 57.73 a.140.2.1,c.55.3.7 68434,68435 1oqyA 368 58.17 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 2scpA 174 58.47 a.39.1.5 17256 2fuqA 747 59.64 2rfgA 297 60.41 1tu7A 208 60.53 a.45.1.1,c.47.1.5 112653,112654 2rn7A 108 61.94 2qalC 232 62.34 1zd8A 227 63.29 1w3iA 293 65.52 c.1.10.1 109152 3cox 507 65.64 3b98A 475 66.48 1i4jA 110 66.71 d.55.1.1 76734 1pnsC 206 66.88 i.1.1.1 88170 1x1zA 252 68.36 c.1.2.3 121613 2hldG 278 68.55 1sjyA 159 70.47 d.113.1.1 98900 3bbyA 215 76.29 1mnaA 298 77.69 c.69.1.22 79322 1ex2A 189 78.64 c.51.4.2 33225 2a2rA 210 78.87 a.45.1.1,c.47.1.5 126058,126059 1zybA 232 79.18 a.4.5.4,b.82.3.2 125815,125816 4crxA 322 82.64 a.60.9.1,d.163.1.1 18095,42155 2e0aA 394 84.50 1fx3A 169 86.74 d.33.1.1 38524 1knqA 175 87.02 c.37.1.17 72786 1ho8A 480 87.83 a.118.1.9 61107 1ct5A 256 88.00 c.1.6.2 28663 3cbuA 214 88.36 1svsA 353 88.98 c.37.1.8 106051