# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ibdA 204 6.55e-13 3cdlA 203 6.92e-13 2pbxA 203 6.98e-13 2hyjA 200 7.34e-13 1pb6A 212 7.54e-13 a.4.1.9,a.121.1.1 88017,88018 1vi0A 206 8.51e-13 a.4.1.9,a.121.1.1 100720,100721 2f07A 197 1.52e-12 2uxuA 210 1.82e-12 2iaiA 230 2.21e-12 1t56A 216 2.71e-12 a.4.1.9,a.121.1.1 106428,106429 2id6A 202 3.77e-12 3bruA 222 4.13e-12 3crjA 199 4.32e-12 3bcgA 215 5.07e-12 3bhqA 211 5.37e-12 2qtqA 213 6.15e-12 2g7sA 194 7.63e-12 a.4.1.9,a.121.1.1 134737,134738 2iekA 200 8.02e-12 3ccyA 203 8.39e-12 1jt6A 188 9.25e-12 a.4.1.9,a.121.1.1 67247,67248 1z77A 200 9.40e-12 a.4.1.9,a.121.1.1 124588,124589 3c2bA 221 1.06e-11 2genA 197 1.33e-11 a.4.1.9,a.121.1.1 135062,135063 1qvtA 194 1.42e-11 a.4.1.9,a.121.1.1 104602,104603 2id3A 225 1.44e-11 a.4.1.9,a.121.1.1 137261,137262 1zkgA 212 2.52e-11 a.4.1.9,a.121.1.1 125194,125195 2fq4A 192 3.10e-11 a.4.1.9,a.121.1.1 133937,133938 2zb9A 214 4.65e-11 1rktA 205 4.74e-11 a.4.1.9,a.121.1.1 97623,97624 2nx4A 194 1.19e-10 2jj7A 186 1.23e-10 3b81A 203 1.38e-10 3colA 196 1.47e-10 2qibA 231 1.95e-10 3cjdA 198 3.85e-10 2zcmA 192 4.07e-10 2o7tA 199 4.28e-10 3cwrA 208 4.83e-10 2fx0A 201 4.84e-10 a.4.1.9,a.121.1.1 134269,134270 2rasA 212 6.36e-10 2g3bA 208 8.85e-10 a.4.1.9,a.121.1.1 134558,134559 2q24A 194 1.12e-09 1zk8A 183 1.22e-09 a.4.1.9,a.121.1.1 125177,125178 2dg7A 195 1.95e-09 2hytA 197 2.44e-09 2i10A 202 2.58e-09 a.4.1.9,a.121.1.1 136960,136961 1ui5A 215 3.52e-09 a.4.1.9,a.121.1.1 107856,107857 3bqyA 209 3.61e-09 2qcoA 210 5.32e-09 2oerA 214 7.40e-09 2of7A 260 1.11e-08 2eh3A 179 1.56e-08 2rekA 199 1.62e-08 2qwtA 196 2.10e-08 2gfnA 209 2.17e-08 a.4.1.9,a.121.1.1 135101,135102 3bniA 229 2.18e-08 2d6yA 202 2.24e-08 a.4.1.9,a.121.1.1 131313,131314 1sgmA 191 2.29e-08 a.4.1.9,a.121.1.1 105537,105538 1t33A 224 2.66e-08 a.4.1.9,a.121.1.1 106295,106296 2fbqA 235 3.17e-08 a.4.1.9,a.121.1.1 133256,133257 2iu5A 195 5.60e-08 2np5A 203 6.40e-08 a.4.1.9,a.121.1.1 138424,138425 2raeA 207 7.50e-08 2o7oA 207 8.69e-08 a.4.1.9,a.121.1.1 138930,138931 2vprA 207 9.93e-08 2guhA 214 1.07e-07 2oi8A 216 1.08e-07 2vkeA 208 1.10e-07 3bjbA 207 1.62e-07 2optA 234 1.70e-07 2yveA 185 1.70e-07 2fd5A 180 2.30e-07 a.4.1.9,a.121.1.1 133291,133292 2g7gA 213 2.43e-07 a.4.1.9,a.121.1.1 134732,134733 2hkuA 215 2.89e-07 2g7lA 243 5.13e-07 a.4.1.9,a.121.1.1 134734,134735 2tct 207 6.77e-07 2dg8A 193 1.09e-06 2hxoA 237 1.99e-06 1z0xA 220 2.05e-06 a.4.1.9,a.121.1.1 124334,124335 2qkoA 215 3.52e-06 1v7bA 185 5.01e-06 a.4.1.9,a.121.1.1 119861,119862 1a6i 217 7.25e-06 1sh5A 245 5.609 a.40.1.1,a.40.1.1 105543,105544 1wmaA 276 6.293 c.2.1.2 121042 1aisB 200 7.760 a.74.1.2,a.74.1.2 18384,18385 1r8sE 203 8.195 a.118.3.1 97248 1pbvA 195 8.939 a.118.3.1 19179 1l5oA 356 9.916 c.39.1.1 77711 1ea5A 537 12.01 c.69.1.1 34592 1yzfA 195 12.31 c.23.10.5 124275 1d0vA 356 12.44 c.39.1.1 32476 2p9bA 458 13.17 2qw5A 335 13.91 1pbv 195 14.06 2pbyA 308 14.58 2on5A 206 14.69 1x1tA 260 15.25 c.2.1.2 121597 1fw1A 216 15.68 a.45.1.1,c.47.1.5 60051,60052 2nugA 221 18.90 1v1rA 400 20.26 c.36.1.11 108272 2gsqA 202 20.57 a.45.1.1,c.47.1.5 17715,33009 2a4kA 263 20.59 c.2.1.2 126156 1jfzA 154 21.24 a.149.1.1 66655 1jlwA 219 21.70 a.45.1.1,c.47.1.5 71741,71742 2q8xA 331 21.99 2q02A 272 23.35 2v9dA 343 24.18 2d1yA 256 24.27 c.2.1.2 131151 2hi4A 495 24.89 1n5dA 288 24.90 c.2.1.2 80030 1vj1A 363 25.16 b.35.1.2,c.2.1.1 100794,100795 1tu7A 208 26.26 a.45.1.1,c.47.1.5 112653,112654 2dc5A 231 27.51 2ifuA 307 28.44 2imsA 171 29.19 2hnlA 225 29.92 2o23A 265 30.35 c.2.1.2 138884 2vjxA 846 30.67 1ad1A 266 31.08 c.1.21.1 29668 2iksA 293 31.61 1yixA 265 31.83 c.1.9.12 123371 1m0uA 249 32.66 a.45.1.1,c.47.1.5 78359,78360 1oktA 211 32.95 a.45.1.1,c.47.1.5 93272,93273 3cnyA 301 33.12 3b8dA 363 33.34 1e0tA 470 33.78 b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 1r8mE 203 34.96 a.118.3.1 97242 2nwqA 272 35.46 1z7lA 276 35.90 1lm5A 214 36.08 d.211.2.1 74029 2ak3A 226 36.19 c.37.1.1,g.41.2.1 31892,45193 1a05A 358 36.51 c.77.1.1 35059 1t35A 191 36.56 c.129.1.1 99108 1yuwA 554 37.38 b.130.1.1,c.55.1.1,c.55.1.1 124070,124071,124072 2cw6A 298 37.50 1ltqA 301 38.27 c.108.1.9,c.37.1.1 78208,78209 2ekpA 239 38.73 1tw9A 206 41.05 a.45.1.1,c.47.1.5 107381,107382 2ew8A 249 42.60 c.2.1.2 132447 2jahA 247 42.93 3bbyA 215 43.00 1uozA 315 43.81 c.6.1.1 113354 3cbuA 214 44.11 2fwmX 250 44.96 1eemA 241 45.42 a.45.1.1,c.47.1.5 17717,33011 2r31A 239 45.55 2pgeA 377 46.17 4crxA 322 48.29 a.60.9.1,d.163.1.1 18095,42155 2pvqA 201 48.63 1ki9A 192 48.70 c.37.1.1 84404 1wqaA 455 49.02 1eg3A 261 49.04 a.39.1.7,a.39.1.7,b.72.1.1 17376,17377,27805 2f6rA 281 50.05 1jyeA 349 50.40 c.93.1.1 67455 2qghA 425 50.62 1f3aA 222 50.96 a.45.1.1,c.47.1.5 17701,32995 2ez6A 221 51.84 a.149.1.1,d.50.1.1 132616,132617 2rjoA 332 51.85 1k6kA 143 52.48 a.174.1.1 77274 2gdrA 202 53.79 1nal1 297 54.19 2gzxA 265 54.32 3cmgA 667 55.21 1qusA 322 55.38 d.2.1.6 36991 6gsvA 217 56.16 a.45.1.1,c.47.1.5 17633,32925 2qu7A 288 57.53 3cnlA 262 57.63 2d2mA 140 57.89 1ku1A 230 58.07 a.118.3.1 72996 1zd8A 227 59.24 3c86A 328 60.13 2qfnA 138 60.26 1cnzA 363 60.50 c.77.1.1 35061 1to3A 304 63.85 c.1.10.1 107161 1x6vA 630 63.94 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2e3zA 465 64.30 3c1mA 473 65.48 1kfcA 268 66.15 c.1.2.4 77371 1f2eA 201 66.64 a.45.1.1,c.47.1.5 17745,33039 2ivxA 257 67.08 2e9lA 469 67.20 1lw7A 365 67.63 c.26.1.3,c.37.1.1 74295,74296 1n2aA 201 67.81 a.45.1.1,c.47.1.5 91553,91554 1m3uA 264 68.46 c.1.12.8 84784 3ctpA 330 68.57 2csuA 457 69.34 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 2qguA 211 69.60 1u61A 138 69.71 a.149.1.1 107696 1xseA 295 70.69 c.2.1.2 115925 1yb1A 272 71.41 c.2.1.2 116599 1ea9C 583 72.02 b.1.18.2,b.71.1.1,c.1.8.1 70087,70088,70089 1dugA 234 72.08 a.45.1.1,c.47.1.5 17718,33012 1j33A 335 72.32 c.39.1.1 77069 1nksA 194 72.47 c.37.1.1 31886 2vrqA 496 72.54 1f44A 324 73.31 a.60.9.1,d.163.1.1 64982,64983 2r91A 286 73.68 1lbkA 208 74.30 a.45.1.1,c.47.1.5 73809,73810 2vgeA 229 74.85 4blmA 265 75.14 e.3.1.1 42721 2z8aA 146 75.82 2ax4A 198 75.83 1a04A 215 75.88 a.4.6.2,c.23.1.1 16234,31089 1yt3A 375 76.36 a.60.8.3,a.60.8.3,c.55.3.5 123992,123993,123994 1umdA 367 76.62 c.36.1.11 99599 1bg4A 302 77.44 c.1.8.3 28806 2aawA 222 77.55 a.45.1.1,c.47.1.5 126496,126497 1lycA 343 77.65 a.93.1.1 74344 2pljA 419 79.47 2cz2A 223 80.85 1adoA 363 82.35 c.1.10.1 29124 1phnB 172 82.84 a.1.1.3 15642 1ad4A 266 82.99 c.1.21.1 29670 1ew6A 137 84.09 a.1.1.2 15637 1w2xA 758 84.59 c.14.1.4,c.14.1.4 109134,109135 1khtA 192 85.29 c.37.1.1 84401 1b0uA 262 86.46 c.37.1.12 32370 1xkqA 280 86.85 c.2.1.2 115417 1g7oA 215 87.12 a.45.1.1,c.47.1.5 60332,60333 1tlfA 301 87.16 c.93.1.1 35687 2cx5A 158 87.28 1iyhA 198 87.63 a.45.1.1,c.47.1.5 83790,83791 2scpA 174 88.20 a.39.1.5 17256 2efeA 267 89.59 2pv7A 298 89.62 1i2sA 282 89.74 e.3.1.1 71104