# List of top-scoring protein chains for TR453.t2k-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2plsA	86	3.03e-08		
2p4pA	86	6.55e-08		
2oaiA	94	1.91e-07		
2nqwA	93	2.43e-07		
2o1rA	81	3.40e-07		
2o3gA	92	5.96e-07		
2p13A	90	8.60e-07		
2pliA	91	2.45e-06		
2r2zA	93	1.01e-05		
2p3hA	101	0.000772		
2rk5A	87	0.002074		
2r6fA	972	19.24		
2nrlA	147	27.09		
1q98A	165	29.03	c.47.1.10	96253
1hjxA	362	39.36	c.1.8.5,d.26.3.1	83512,83513
2fztA	79	43.42	a.46.3.1	134476
1fxiA	96	47.98	d.15.4.1	37664
1mytA	146	48.28	a.1.1.2	15207
1lujB	75	52.71	a.161.1.1	78226
1x4wA	67	75.57		
3b42A	135	89.77