# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2plsA	86	8.04e-13		
2o1rA	81	6.47e-12		
2nqwA	93	7.23e-12		
2p4pA	86	1.16e-11		
2p13A	90	1.71e-11		
2pliA	91	2.16e-11		
2p3hA	101	6.89e-11		
2rk5A	87	3.12e-10		
2oaiA	94	3.44e-10		
1pvmA	184	0.6161	d.37.1.1,d.37.1.1,g.41.13.1	95171,95172,95173
1pbwA	216	3.188	a.116.1.1	19103
1eb6A	177	9.454	d.92.1.12	64895
2ngrB	234	10.86	a.116.1.1	19105
2q4wA	524	12.46		
1d5yA	292	12.90	a.4.1.8,a.4.1.8,d.60.1.2	16055,16056,39532
2inpL	89	15.02		
2pp6A	102	16.91		
1f0kA	364	18.41	c.87.1.2	35465
1w1oA	534	20.37	d.58.32.4,d.145.1.1	109071,109072
2bvfA	459	21.22		
2amwA	83	21.89		
1ev7A	317	23.57	c.52.1.9	33315
2c1vA	338	24.72		
1tx4A	198	28.11	a.116.1.1	19098
1tzeE	98	30.70	d.93.1.1	40468
2h61A	92	31.95	a.39.1.2	136169
2exrA	524	35.75		
2p18A	311	35.86		
2i0kA	561	36.71		
2gcuA	245	38.38		
2ayuA	417	39.33	d.305.1.1	127571
1qltA	560	39.37	d.58.32.1,d.145.1.1	39457,41720
2od0A	105	41.38		
1khtA	192	41.89	c.37.1.1	84401
2uuuA	584	48.27		
1yzxA	226	54.12		
1nmsA	249	54.38	c.17.1.1	85879
3bdrA	190	56.51		
1xm8A	254	58.85	d.157.1.2	115475
1oe1A	336	62.00	b.6.1.3,b.6.1.3	86891,86892
1svsA	353	62.04	c.37.1.8	106051
1cp3A	277	63.93	c.17.1.1	30992
1p9kA	79	66.65	d.66.1.6	94392
1a7tA	232	66.70	d.157.1.1	42041
1t70A	255	72.48	d.159.1.9	112275
1zr6A	503	72.89		
1k07A	263	73.72	d.157.1.1	77218
1ko3A	230	75.15	d.157.1.1	90974
2ovjA	201	75.50		
1oasA	322	75.65	c.79.1.1	35293
1e8gA	560	78.66	d.58.32.1,d.145.1.1	39455,41718
3ddyA	186	79.15		
1s4nA	348	81.07	c.68.1.16	98501
1t8kA	77	81.66	a.28.1.1	106666
1g13A	162	83.41	b.95.1.1	60194
1cipA	353	84.28	a.66.1.1,c.37.1.8	18210,32093
2i75A	320	84.37		
1wvfA	520	84.66	d.58.32.1,d.145.1.1	121337,121338
2ehsA	77	87.60		
1mqoA	227	88.05	d.157.1.1	103846