# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2plsA	86	2.53e-11		
2p4pA	86	8.84e-11		
2o1rA	81	1.48e-10		
2nqwA	93	1.49e-10		
2p13A	90	3.70e-10		
2pliA	91	5.61e-10		
2p3hA	101	1.15e-09		
2oaiA	94	2.03e-09		
2rk5A	87	4.29e-09		
1pvmA	184	0.2387	d.37.1.1,d.37.1.1,g.41.13.1	95171,95172,95173
1pbwA	216	3.032	a.116.1.1	19103
1eb6A	177	6.075	d.92.1.12	64895
2ngrB	234	7.137	a.116.1.1	19105
1f0kA	364	9.496	c.87.1.2	35465
2i0kA	561	11.07		
2pp6A	102	11.85		
2inpL	89	13.04		
1w1oA	534	16.59	d.58.32.4,d.145.1.1	109071,109072
1tx4A	198	19.06	a.116.1.1	19098
3ddyA	186	21.90		
2bvfA	459	22.88		
3ce7A	107	25.31		
2c1vA	338	25.49		
2q4wA	524	26.74		
2gcuA	245	27.67		
2p18A	311	29.43		
1qltA	560	29.96	d.58.32.1,d.145.1.1	39457,41720
1d5yA	292	33.28	a.4.1.8,a.4.1.8,d.60.1.2	16055,16056,39532
2ayuA	417	33.99	d.305.1.1	127571
2amwA	83	34.01		
2exrA	524	35.70		
1svsA	353	36.58	c.37.1.8	106051
2uuuA	584	36.65		
1oasA	322	37.69	c.79.1.1	35293
2vfrA	422	39.74		
1wvfA	520	43.74	d.58.32.1,d.145.1.1	121337,121338
1kzlA	208	44.07	b.43.4.3,b.43.4.3	77635,77636
1g13A	162	44.74	b.95.1.1	60194
1cipA	353	48.07	a.66.1.1,c.37.1.8	18210,32093
2od0A	105	48.29		
1nmsA	249	49.10	c.17.1.1	85879
1fcjA	322	50.91	c.79.1.1	35289
1yzxA	226	52.78		
1vaoA	560	53.72	d.58.32.1,d.145.1.1	39461,41724
2b49A	287	54.07		
2ovjA	201	55.91		
2h61A	92	58.47	a.39.1.2	136169
1a7tA	232	59.04	d.157.1.1	42041
1wi5A	119	59.06	b.40.4.5	114661
1t8kA	77	59.53	a.28.1.1	106666
1khtA	192	60.25	c.37.1.1	84401
1xm8A	254	61.56	d.157.1.2	115475
1i8dA	213	63.80	b.43.4.3,b.43.4.3	61953,61954
1aozA	552	66.42	b.6.1.3,b.6.1.3,b.6.1.3	23124,23125,23126
1cp3A	277	70.12	c.17.1.1	30992
2i75A	320	72.94		
1ev7A	317	75.99	c.52.1.9	33315
1a65A	504	76.40	b.6.1.3,b.6.1.3,b.6.1.3	23148,23149,23150
1qh5A	260	76.47	d.157.1.2	42057
1tzeE	98	76.53	d.93.1.1	40468
1am4A	199	76.65	a.116.1.1	19100
1w5rA	278	76.72	d.3.1.5	120643
3byiA	214	78.25		
1oe1A	336	79.74	b.6.1.3,b.6.1.3	86891,86892
2d74B	148	82.02		
2oauA	306	83.71	b.38.1.3,d.58.43.1,f.34.1.1	138978,138979,138980
1e8gA	560	84.21	d.58.32.1,d.145.1.1	39455,41718
2qnwA	82	88.55