# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2plsA 86 8.66e-16 2nqwA 93 5.77e-15 2p13A 90 6.21e-15 2o1rA 81 1.08e-14 2pliA 91 3.50e-14 2p3hA 101 4.10e-14 2oaiA 94 5.71e-14 2p4pA 86 1.25e-13 2rk5A 87 1.05e-12 1pvmA 184 0.5405 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 2pp6A 102 2.035 1ev7A 317 2.287 c.52.1.9 33315 1xm8A 254 5.467 d.157.1.2 115475 1f0kA 364 5.527 c.87.1.2 35465 2bvfA 459 5.908 3ddyA 186 7.706 3ce7A 107 7.809 2amwA 83 8.171 2od0A 105 8.520 2inpL 89 9.870 1pbwA 216 12.00 a.116.1.1 19103 1eb6A 177 13.14 d.92.1.12 64895 2gpiA 91 13.50 2i0kA 561 15.31 1tzeE 98 15.47 d.93.1.1 40468 2d74B 148 17.15 1kzlA 208 17.33 b.43.4.3,b.43.4.3 77635,77636 2g2kA 170 18.32 1a65A 504 19.61 b.6.1.3,b.6.1.3,b.6.1.3 23148,23149,23150 2f96A 224 20.34 c.55.3.5 133153 1i8dA 213 22.50 b.43.4.3,b.43.4.3 61953,61954 1k07A 263 22.93 d.157.1.1 77218 2qedA 258 23.26 1t8kA 77 23.34 a.28.1.1 106666 2uuuA 584 23.60 2obwA 258 24.13 1aozA 552 26.56 b.6.1.3,b.6.1.3,b.6.1.3 23124,23125,23126 1a7tA 232 26.80 d.157.1.1 42041 2ehsA 77 26.92 1ed7A 45 27.33 b.72.2.1 27809 1w5rA 278 27.33 d.3.1.5 120643 1w1oA 534 28.08 d.58.32.4,d.145.1.1 109071,109072 1zpuA 534 28.23 1f80D 81 28.65 a.28.1.1 59686 1cf7A 76 28.89 a.4.5.17 16151 2exrA 524 29.03 1svsA 353 31.49 c.37.1.8 106051 1hfuA 503 31.60 b.6.1.3,b.6.1.3,b.6.1.3 65827,65828,65829 2qt6A 498 32.38 2gcuA 245 32.58 2qnwA 82 32.77 1qltA 560 35.20 d.58.32.1,d.145.1.1 39457,41720 2aioA 269 35.91 d.157.1.1 126829 1gycA 499 36.75 b.6.1.3,b.6.1.3,b.6.1.3 70748,70749,70750 2c1vA 338 38.73 1r1qA 100 39.52 d.93.1.1 104763 1dv5A 80 40.20 a.28.1.3 59139 1w1kA 560 41.11 d.58.32.1,d.145.1.1 109059,109060 2vc6A 292 42.27 1e8gA 560 42.32 d.58.32.1,d.145.1.1 39455,41718 2hrgA 496 42.80 1f5tA 121 43.71 a.4.5.24,a.76.1.1 16203,18409 2htmA 268 43.79 1cipA 353 47.12 a.66.1.1,c.37.1.8 18210,32093 2ehhA 294 47.13 2p18A 311 47.19 1v10A 521 48.33 b.6.1.3,b.6.1.3,b.6.1.3 108224,108225,108226 2ngrB 234 48.66 a.116.1.1 19105 2q4wA 524 49.70 1fm0D 81 50.01 d.15.3.1 37642 1gx3A 284 51.20 d.3.1.5 70678 2vfrA 422 51.57 1v58A 241 53.13 c.47.1.9,d.17.3.1 108371,108372 1vkuA 100 53.61 a.28.1.1 108690 1znbA 232 54.98 d.157.1.1 42039 1hi0P 664 55.03 e.8.1.6 61051 1l6rA 227 56.05 c.108.1.10 77768 2rfgA 297 56.46 1m9xC 146 56.56 a.73.1.1 84907 1kyaA 499 56.76 b.6.1.3,b.6.1.3,b.6.1.3 73203,73204,73205 1smlA 269 56.92 d.157.1.1 42053 2b49A 287 58.11 2ih8A 559 58.53 b.6.1.3,b.6.1.3,b.6.1.3 137407,137408,137409 2gg6A 455 59.05 1regX 122 59.30 d.58.27.1 39406 1pczA 191 59.94 d.129.1.1,d.129.1.1 41292,41293 2pbeA 294 60.10 2v36B 193 60.67 1vaoA 560 60.98 d.58.32.1,d.145.1.1 39461,41724 1qh5A 260 61.72 d.157.1.2 42057 1qnaA 200 62.31 d.129.1.1,d.129.1.1 41226,41227 1nq7A 244 62.55 a.123.1.1 92047 1t3qC 288 63.58 d.87.2.1,d.145.1.3 106371,106372 2h5uA 499 63.97 2ayuA 417 64.11 d.305.1.1 127571 2cxiA 348 64.33 2bf5A 98 64.82 d.137.1.1 128405 2bszA 278 65.23 d.3.1.5 129131 1nmsA 249 65.79 c.17.1.1 85879 1qw2A 102 66.37 d.249.1.1 96456 2hzlA 365 66.49 1khtA 192 66.78 c.37.1.1 84401 2boyA 254 67.33 1ytbA 180 68.66 d.129.1.1,d.129.1.1 41276,41277 1jyrA 96 68.89 d.93.1.1 71969 1mp9A 198 70.53 d.129.1.1,d.129.1.1 91385,91386 1zr6A 503 72.30 1g8tA 245 74.00 d.4.1.2 37137 2q9oA 559 75.29 1mkmA 249 75.61 a.4.5.33,d.110.2.2 79242,79243 2d68A 82 77.49 1yzxA 226 79.65 2agtA 319 80.50 2bsxA 253 83.86 c.56.2.1 129128 1w94A 156 84.28 c.51.1.2 120774 1kk8B 139 84.64 a.39.1.5 77430 2gxgA 146 85.75 1o5kA 306 89.00 c.1.10.1 92504 1cnt1 187 89.43