# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2plsA	86	1.81e-13		
2o1rA	81	7.43e-13		
2nqwA	93	7.89e-13		
2p13A	90	8.87e-13		
2pliA	91	1.39e-12		
2p4pA	86	2.06e-12		
2p3hA	101	2.23e-12		
2oaiA	94	3.90e-12		
2rk5A	87	1.07e-10		
1pvmA	184	0.7267	d.37.1.1,d.37.1.1,g.41.13.1	95171,95172,95173
1pbwA	216	1.928	a.116.1.1	19103
2ngrB	234	3.398	a.116.1.1	19105
2pp6A	102	5.237		
1eb6A	177	8.694	d.92.1.12	64895
1tx4A	198	9.542	a.116.1.1	19098
1f0kA	364	12.55	c.87.1.2	35465
2bvfA	459	14.04		
2od0A	105	14.37		
1tzeE	98	19.24	d.93.1.1	40468
2c1vA	338	21.62		
2gcuA	245	22.35		
2inpL	89	22.81		
2q4wA	524	25.24		
1ev7A	317	25.44	c.52.1.9	33315
2i0kA	561	26.06		
3ddyA	186	27.18		
1wvfA	520	27.42	d.58.32.1,d.145.1.1	121337,121338
2ovjA	201	28.30		
2amwA	83	29.41		
2h61A	92	29.77	a.39.1.2	136169
1khtA	192	32.66	c.37.1.1	84401
2p18A	311	35.61		
1qltA	560	36.43	d.58.32.1,d.145.1.1	39457,41720
2qa1A	500	36.86		
1xm8A	254	40.29	d.157.1.2	115475
2ayuA	417	40.38	d.305.1.1	127571
3byiA	214	41.97		
1oasA	322	44.35	c.79.1.1	35293
1w1oA	534	46.12	d.58.32.4,d.145.1.1	109071,109072
1svsA	353	48.10	c.37.1.8	106051
1t8kA	77	49.41	a.28.1.1	106666
1p9kA	79	52.75	d.66.1.6	94392
1o4rA	108	55.12	d.93.1.1	92469
2exrA	524	58.16		
1kzlA	208	58.51	b.43.4.3,b.43.4.3	77635,77636
2uuuA	584	60.56		
1w5rA	278	62.58	d.3.1.5	120643
1r1qA	100	66.97	d.93.1.1	104763
1a1aA	107	67.47	d.93.1.1	40449
1qw2A	102	72.13	d.249.1.1	96456
1k07A	263	72.14	d.157.1.1	77218
1f2fA	104	72.50	d.93.1.1	40455
1i8dA	213	73.11	b.43.4.3,b.43.4.3	61953,61954
1a7tA	232	73.59	d.157.1.1	42041
2i75A	320	74.60		
1l6rA	227	76.17	c.108.1.10	77768
1cipA	353	77.92	a.66.1.1,c.37.1.8	18210,32093
1d5yA	292	77.98	a.4.1.8,a.4.1.8,d.60.1.2	16055,16056,39532
2oauA	306	79.31	b.38.1.3,d.58.43.1,f.34.1.1	138978,138979,138980
3bdrA	190	81.26		
1yzxA	226	82.63		
1w85I	49	83.93	a.9.1.1	114347
1kk8B	139	86.02	a.39.1.5	77430
1fcjA	322	86.03	c.79.1.1	35289
2gpiA	91	87.11		
1ykjA	394	88.34		
1qh5A	260	89.29	d.157.1.2	42057