# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2plsA	86	3.76e-13		
2nqwA	93	1.63e-12		
2p4pA	86	1.71e-12		
2o1rA	81	2.05e-12		
2p13A	90	2.42e-12		
2p3hA	101	2.55e-12		
2pliA	91	3.44e-12		
2oaiA	94	1.11e-11		
2rk5A	87	1.36e-10		
1pbwA	216	2.168	a.116.1.1	19103
1pvmA	184	2.412	d.37.1.1,d.37.1.1,g.41.13.1	95171,95172,95173
2ngrB	234	4.489	a.116.1.1	19105
1f0kA	364	10.71	c.87.1.2	35465
1tx4A	198	12.09	a.116.1.1	19098
1eb6A	177	12.73	d.92.1.12	64895
2bvfA	459	18.86		
1ev7A	317	20.79	c.52.1.9	33315
2pp6A	102	22.73		
2i0kA	561	23.80		
2c1vA	338	25.17		
2amwA	83	25.31		
1wvfA	520	26.01	d.58.32.1,d.145.1.1	121337,121338
2q4wA	524	28.10		
2ovjA	201	30.06		
2inpL	89	30.77		
2od0A	105	30.85		
1khtA	192	31.46	c.37.1.1	84401
2h61A	92	33.61	a.39.1.2	136169
1tzeE	98	35.99	d.93.1.1	40468
2ayuA	417	38.54	d.305.1.1	127571
1t8kA	77	40.39	a.28.1.1	106666
2p18A	311	40.45		
1w1oA	534	40.73	d.58.32.4,d.145.1.1	109071,109072
2gcuA	245	42.14		
3byiA	214	47.89		
1qltA	560	49.96	d.58.32.1,d.145.1.1	39457,41720
1d5yA	292	50.00	a.4.1.8,a.4.1.8,d.60.1.2	16055,16056,39532
3bdrA	190	50.60		
1xm8A	254	56.19	d.157.1.2	115475
1a7tA	232	58.78	d.157.1.1	42041
1oasA	322	60.56	c.79.1.1	35293
1xy7A	166	61.13	d.32.1.9	116215
1yzxA	226	63.40		
1s4nA	348	70.38	c.68.1.16	98501
1l6rA	227	71.77	c.108.1.10	77768
2exrA	524	71.90		
1w5rA	278	73.21	d.3.1.5	120643
2qa1A	500	73.64		
2uuuA	584	74.14		
1svsA	353	77.55	c.37.1.8	106051
1am4A	199	78.95	a.116.1.1	19100
1t70A	255	83.07	d.159.1.9	112275
1qw2A	102	83.70	d.249.1.1	96456
1izoA	417	85.32	a.104.1.1	83851
1kk8B	139	87.21	a.39.1.5	77430