# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2plsA	86	3.04e-13		
2p4pA	86	1.46e-12		
2o1rA	81	1.53e-12		
2nqwA	93	2.06e-12		
2p13A	90	2.16e-12		
2pliA	91	2.68e-12		
2p3hA	101	2.97e-12		
2oaiA	94	1.23e-11		
2rk5A	87	1.60e-10		
1pvmA	184	1.168	d.37.1.1,d.37.1.1,g.41.13.1	95171,95172,95173
1pbwA	216	2.230	a.116.1.1	19103
2ngrB	234	4.706	a.116.1.1	19105
1eb6A	177	11.17	d.92.1.12	64895
1f0kA	364	13.53	c.87.1.2	35465
2pp6A	102	15.65		
1ev7A	317	16.67	c.52.1.9	33315
1tx4A	198	17.75	a.116.1.1	19098
2inpL	89	20.99		
2bvfA	459	21.43		
2q4wA	524	23.41		
2c1vA	338	30.68		
1wvfA	520	31.09	d.58.32.1,d.145.1.1	121337,121338
1khtA	192	34.72	c.37.1.1	84401
2i0kA	561	35.86		
2h61A	92	35.96	a.39.1.2	136169
1tzeE	98	36.95	d.93.1.1	40468
2gcuA	245	38.12		
1w1oA	534	38.85	d.58.32.4,d.145.1.1	109071,109072
2ovjA	201	39.07		
2ayuA	417	39.67	d.305.1.1	127571
2od0A	105	41.37		
2p18A	311	42.51		
3bdrA	190	43.94		
2amwA	83	47.02		
2exrA	524	48.90		
1xm8A	254	55.19	d.157.1.2	115475
1d5yA	292	57.68	a.4.1.8,a.4.1.8,d.60.1.2	16055,16056,39532
1izoA	417	63.77	a.104.1.1	83851
1xy7A	166	64.08	d.32.1.9	116215
1t8kA	77	64.40	a.28.1.1	106666
1g13A	162	70.11	b.95.1.1	60194
2uuuA	584	75.33		
1qltA	560	76.89	d.58.32.1,d.145.1.1	39457,41720
1a7tA	232	77.14	d.157.1.1	42041
3ddyA	186	81.59		
2qa1A	500	84.51		
1oasA	322	84.63	c.79.1.1	35293
1svsA	353	87.03	c.37.1.8	106051
1ihp	438	87.17		
3byiA	214	87.29