# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2plsA	86	6.24e-10		
2nqwA	93	9.09e-10		
2pliA	91	2.94e-09		
2o1rA	81	3.80e-09		
2p4pA	86	5.64e-09		
2p13A	90	6.00e-09		
2p3hA	101	9.09e-09		
2oaiA	94	2.98e-08		
2rk5A	87	3.59e-08		
2ngrB	234	5.981	a.116.1.1	19105
2pp6A	102	8.035		
1pvmA	184	8.533	d.37.1.1,d.37.1.1,g.41.13.1	95171,95172,95173
1tx4A	198	9.617	a.116.1.1	19098
1pbwA	216	16.25	a.116.1.1	19103
1eb6A	177	28.61	d.92.1.12	64895
3byiA	214	31.60		
3ce7A	107	32.33		
1neeA	138	37.21	d.241.1.1,g.59.1.1	91841,91842
1g13A	162	42.42	b.95.1.1	60194
1nmsA	249	44.48	c.17.1.1	85879
3ci3A	194	45.32		
1gqpA	221	47.24	b.18.1.9	70372
2ovjA	201	48.67		
1dv5A	80	49.29	a.28.1.3	59139
2g2kA	170	50.10		
2p18A	311	52.98		
1a1aA	107	53.05	d.93.1.1	40449
2amwA	83	56.83		
1fm0D	81	62.02	d.15.3.1	37642
1wi5A	119	64.94	b.40.4.5	114661
1w5rA	278	67.26	d.3.1.5	120643
2gpiA	91	69.83		
1cp3A	277	70.13	c.17.1.1	30992
1d5yA	292	71.97	a.4.1.8,a.4.1.8,d.60.1.2	16055,16056,39532
1tzeE	98	72.16	d.93.1.1	40468
1gx3A	284	72.59	d.3.1.5	70678
1xm8A	254	73.65	d.157.1.2	115475
1o4rA	108	78.93	d.93.1.1	92469
2fh5B	214	81.59	c.37.1.8	133478
1r1uA	106	81.76	a.4.5.5	104771
2nt8A	223	86.48		
3bjhA	119	88.22