# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2plsA	86	2.08e-10		
2p13A	90	1.04e-09		
2pliA	91	1.12e-09		
2nqwA	93	1.14e-09		
2o1rA	81	1.47e-09		
2p4pA	86	2.24e-09		
2p3hA	101	4.35e-09		
2oaiA	94	1.06e-08		
2rk5A	87	3.91e-08		
1pvmA	184	0.5001	d.37.1.1,d.37.1.1,g.41.13.1	95171,95172,95173
1pbwA	216	1.750	a.116.1.1	19103
1eb6A	177	10.32	d.92.1.12	64895
2ngrB	234	11.20	a.116.1.1	19105
2od0A	105	19.91		
1tx4A	198	20.82	a.116.1.1	19098
2i0kA	561	27.19		
3ddyA	186	28.15		
2pp6A	102	28.38		
2inpL	89	29.59		
1w5rA	278	29.91	d.3.1.5	120643
2ayuA	417	30.58	d.305.1.1	127571
1f0kA	364	32.90	c.87.1.2	35465
2bvfA	459	34.55		
1w1oA	534	37.17	d.58.32.4,d.145.1.1	109071,109072
1tzeE	98	37.39	d.93.1.1	40468
2amwA	83	40.19		
1ev7A	317	42.09	c.52.1.9	33315
1khtA	192	45.75	c.37.1.1	84401
1a7tA	232	46.91	d.157.1.1	42041
2c1vA	338	52.12		
2q4wA	524	53.25		
1qw2A	102	54.12	d.249.1.1	96456
1kzlA	208	58.86	b.43.4.3,b.43.4.3	77635,77636
1qltA	560	60.19	d.58.32.1,d.145.1.1	39457,41720
1wvfA	520	65.15	d.58.32.1,d.145.1.1	121337,121338
1ifcA	132	69.92	b.60.1.2	27173
1icmA	131	70.33	b.60.1.2	27174
1t8kA	77	72.10	a.28.1.1	106666
1svsA	353	72.14	c.37.1.8	106051
2h61A	92	75.44	a.39.1.2	136169
1j3gA	187	77.46	d.118.1.1	77075
2gcuA	245	78.69		
2oauA	306	78.86	b.38.1.3,d.58.43.1,f.34.1.1	138978,138979,138980
2uuuA	584	80.77		
2fgsA	179	81.66		
1gx3A	284	84.14	d.3.1.5	70678
1s4nA	348	85.69	c.68.1.16	98501
2ftbA	125	86.81	b.60.1.2	134057
2ovjA	201	89.04		
1x3zB	72	89.58	a.189.1.1	121674