# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2p4pA 86 2.95e-14 2plsA 86 7.36e-14 2nqwA 93 1.60e-13 2p13A 90 2.06e-13 2o1rA 81 4.34e-13 2pliA 91 4.74e-13 2p3hA 101 7.93e-13 2oaiA 94 2.61e-12 2rk5A 87 3.71e-11 1pvmA 184 0.4812 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 2v36B 193 1.305 1pbwA 216 1.477 a.116.1.1 19103 1j3gA 187 1.958 d.118.1.1 77075 1kit 757 4.356 2ngrB 234 4.546 a.116.1.1 19105 1olzA 663 4.984 b.1.1.4,b.69.12.1,g.16.2.1 93341,93342,93343 2qqzA 126 7.938 1bifA 469 8.229 c.37.1.7,c.60.1.4 31961,34003 1khtA 192 8.967 c.37.1.1 84401 1h09A 338 9.626 b.109.1.1,c.1.8.8 83420,83421 2pp6A 102 9.946 2vfrA 422 11.13 1pioA 257 11.26 e.3.1.1 42719 1oroA 213 13.13 c.61.1.1 34093 2jdxA 385 13.41 d.126.1.2 41139 1mxsA 225 13.41 c.1.10.1 91494 1f0cA 305 13.44 e.1.1.1 42676 1lpjA 133 14.29 b.60.1.2 78123 3b9oA 440 14.67 1oasA 322 15.32 c.79.1.1 35293 1kcwA 1046 15.95 b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3 23151,23152,23153,23154,23155,23156 2qedA 258 16.42 2pe3A 354 16.99 1cvrA 435 19.62 b.1.18.12,c.17.1.2 21949,31006 1cf2O 337 19.81 c.2.1.3,d.81.1.1 29994,39909 1hzoA 271 19.97 e.3.1.1 71092 2uuuA 584 21.95 1e3dA 266 22.39 e.19.1.1 59188 1gycA 499 22.60 b.6.1.3,b.6.1.3,b.6.1.3 70748,70749,70750 1neeA 138 23.49 d.241.1.1,g.59.1.1 91841,91842 1k3iA 656 23.52 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 2oh5A 248 24.41 1fcjA 322 25.26 c.79.1.1 35289 1w5rA 278 25.73 d.3.1.5 120643 1kyaA 499 26.24 b.6.1.3,b.6.1.3,b.6.1.3 73203,73204,73205 1w1oA 534 26.58 d.58.32.4,d.145.1.1 109071,109072 1bmbA 123 27.29 d.93.1.1 40466 2q4wA 524 28.38 1py5A 326 28.68 d.144.1.7 104389 1mdcA 131 28.84 b.60.1.2 27198 1v10A 521 29.15 b.6.1.3,b.6.1.3,b.6.1.3 108224,108225,108226 1qw2A 102 29.63 d.249.1.1 96456 1xbfA 140 31.27 d.273.1.1 109538 2gcuA 245 32.50 2amwA 83 33.95 1p42A 270 36.09 d.14.1.7,d.14.1.7 87754,87755 2obwA 258 36.35 2iufA 688 37.15 2inpL 89 37.74 1x3zB 72 38.29 a.189.1.1 121674 1k0rA 366 40.71 b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1 67961,67962,67963,67964 2p9wA 334 41.64 2omf 340 43.20 3dfuA 232 43.80 2asbA 251 43.91 b.40.4.5,d.52.3.1,d.52.3.1 127244,127245,127246 2hhjA 267 44.40 c.60.1.1 136497 2i3oA 516 44.40 d.153.1.6 137027 1ermA 263 45.54 e.3.1.1 42690 2od0A 105 46.04 1hfuA 503 46.22 b.6.1.3,b.6.1.3,b.6.1.3 65827,65828,65829 1yarA 233 50.98 d.153.1.4 122837 1q7fA 286 51.23 b.68.9.1 96036 1yptA 305 51.85 c.45.1.2 32686 1a65A 504 51.96 b.6.1.3,b.6.1.3,b.6.1.3 23148,23149,23150 1qg6A 261 52.80 c.2.1.2 29919 1tzeE 98 53.27 d.93.1.1 40468 2gpjA 252 53.69 1xfdA 723 54.02 b.70.3.1,c.69.1.24 115251,115252 1z7yA 322 54.09 c.79.1.1 124679 1gx3A 284 54.54 d.3.1.5 70678 1jdwA 423 55.31 d.126.1.2 41129 1pixA 587 55.73 c.14.1.4,c.14.1.4 118578,118579 2p18A 311 56.54 1ltdA 506 56.95 c.1.4.1,d.120.1.1 28618,41086 1kfwA 435 57.24 c.1.8.5,d.26.3.1 77376,77377 2vhxA 377 59.34 1xvwA 160 60.65 c.47.1.10 122387 1f7sA 139 60.66 d.109.1.2 40857 1wdiA 345 61.10 e.53.1.1 114535 1kuuA 202 61.15 d.153.2.1 73019 1pmaA 233 62.27 d.153.1.4 41918 3b9jB 350 62.36 2yw2A 424 63.49 2hrgA 496 64.34 2rk9A 145 64.77 1ldjA 760 64.97 a.4.5.34,a.118.17.1,e.40.1.1 73847,73848,73849 1kwnA 207 65.21 b.25.1.1 77568 1ep3B 262 66.87 b.43.4.2,c.25.1.3 25664,31554 1qgrA 876 67.73 a.118.1.1 19119 1ta0A 197 69.35 c.108.1.16 106729 1t8kA 77 70.25 a.28.1.1 106666 1qwoA 442 70.39 c.60.1.2 104620 1s4nA 348 71.28 c.68.1.16 98501 1tvgA 153 71.64 b.18.1.9 112683 2pv2A 103 71.69 1enp 312 71.96 1pkhA 204 72.36 b.85.4.1 94832 1hj9A 226 73.62 b.47.1.2 65845 1ri6A 343 74.62 b.69.11.1 97503 3bg2A 444 78.48 2hr0A 645 78.93 2pdrA 149 79.23 1r1qA 100 80.50 d.93.1.1 104763 1ko3A 230 81.52 d.157.1.1 90974 1y7lA 316 81.65 c.79.1.1 122695 1s9jA 341 83.12 d.144.1.7 112049 1d5yA 292 83.48 a.4.1.8,a.4.1.8,d.60.1.2 16055,16056,39532 2atfA 200 83.84 b.82.1.19 127290 1anjA 446 84.66 c.76.1.1 35008 2h5uA 499 84.76 2pbeA 294 86.93