# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2plsA	86	3.50e-10		
2p4pA	86	1.17e-09		
2nqwA	93	1.85e-09		
2p13A	90	1.98e-09		
2o1rA	81	2.52e-09		
2pliA	91	2.97e-09		
2p3hA	101	4.60e-09		
2oaiA	94	2.22e-08		
2rk5A	87	7.51e-08		
1pvmA	184	0.4497	d.37.1.1,d.37.1.1,g.41.13.1	95171,95172,95173
1pbwA	216	1.968	a.116.1.1	19103
2ngrB	234	7.335	a.116.1.1	19105
1eb6A	177	11.14	d.92.1.12	64895
1tx4A	198	15.96	a.116.1.1	19098
2i0kA	561	26.07		
2ayuA	417	26.60	d.305.1.1	127571
1f0kA	364	28.29	c.87.1.2	35465
2inpL	89	31.92		
1w1oA	534	38.80	d.58.32.4,d.145.1.1	109071,109072
2c1vA	338	43.82		
1tzeE	98	44.94	d.93.1.1	40468
1ev7A	317	46.57	c.52.1.9	33315
1w5rA	278	49.54	d.3.1.5	120643
2bvfA	459	50.12		
2amwA	83	51.46		
2q4wA	524	52.59		
1a7tA	232	57.41	d.157.1.1	42041
1khtA	192	60.41	c.37.1.1	84401
2h61A	92	61.30	a.39.1.2	136169
1wvfA	520	61.50	d.58.32.1,d.145.1.1	121337,121338
1xy7A	166	65.44	d.32.1.9	116215
1d5yA	292	66.70	a.4.1.8,a.4.1.8,d.60.1.2	16055,16056,39532
1t8kA	77	71.81	a.28.1.1	106666
1j3gA	187	72.29	d.118.1.1	77075
1qltA	560	72.99	d.58.32.1,d.145.1.1	39457,41720
1am4A	199	76.10	a.116.1.1	19100
2pp6A	102	77.08		
2od0A	105	78.48		
1x3zB	72	82.81	a.189.1.1	121674
2ovjA	201	84.16		
3byiA	214	85.65		
2gcuA	245	87.24		
1s4nA	348	89.51	c.68.1.16	98501
1kbvA	327	89.80	b.6.1.3,b.6.1.3	68395,68396