# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2plsA	86	1.47e-11		
2p4pA	86	3.63e-11		
2o1rA	81	9.02e-11		
2p13A	90	1.32e-10		
2nqwA	93	1.36e-10		
2p3hA	101	2.00e-10		
2pliA	91	2.17e-10		
2oaiA	94	1.32e-09		
2rk5A	87	2.27e-09		
1pvmA	184	0.5715	d.37.1.1,d.37.1.1,g.41.13.1	95171,95172,95173
1pbwA	216	1.665	a.116.1.1	19103
2ngrB	234	5.332	a.116.1.1	19105
1f0kA	364	9.167	c.87.1.2	35465
1eb6A	177	10.97	d.92.1.12	64895
1tx4A	198	21.34	a.116.1.1	19098
2c1vA	338	22.90		
2i0kA	561	23.26		
2pp6A	102	26.23		
2inpL	89	27.18		
3ce7A	107	28.52		
2ayuA	417	34.13	d.305.1.1	127571
1g13A	162	35.25	b.95.1.1	60194
2bvfA	459	36.73		
1w1oA	534	37.23	d.58.32.4,d.145.1.1	109071,109072
2q4wA	524	37.81		
2ovjA	201	42.59		
1khtA	192	55.34	c.37.1.1	84401
2h61A	92	55.82	a.39.1.2	136169
2exrA	524	57.32		
1am4A	199	57.76	a.116.1.1	19100
1ev7A	317	57.88	c.52.1.9	33315
1oasA	322	58.97	c.79.1.1	35293
2gcuA	245	61.71		
1wvfA	520	63.16	d.58.32.1,d.145.1.1	121337,121338
2amwA	83	66.74		
2p18A	311	68.74		
1a7tA	232	71.89	d.157.1.1	42041
1d5yA	292	72.72	a.4.1.8,a.4.1.8,d.60.1.2	16055,16056,39532
3byiA	214	81.45		
1j3gA	187	82.45	d.118.1.1	77075
1x3zB	72	84.50	a.189.1.1	121674
1fm0D	81	85.79	d.15.3.1	37642