# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2plsA	86	1.68e-12		
2o1rA	81	5.42e-12		
2p13A	90	7.38e-12		
2p4pA	86	8.44e-12		
2nqwA	93	9.34e-12		
2pliA	91	2.15e-11		
2p3hA	101	3.09e-11		
2oaiA	94	7.74e-11		
2rk5A	87	4.41e-10		
1pvmA	184	0.1800	d.37.1.1,d.37.1.1,g.41.13.1	95171,95172,95173
1pbwA	216	3.019	a.116.1.1	19103
1f0kA	364	4.144	c.87.1.2	35465
2ngrB	234	7.554	a.116.1.1	19105
2pp6A	102	8.110		
1eb6A	177	17.12	d.92.1.12	64895
2i0kA	561	18.23		
3ce7A	107	19.19		
2ayuA	417	19.79	d.305.1.1	127571
2bvfA	459	20.92		
1ev7A	317	22.70	c.52.1.9	33315
1tx4A	198	27.72	a.116.1.1	19098
2c1vA	338	29.42		
1g13A	162	32.22	b.95.1.1	60194
2inpL	89	32.92		
3ddyA	186	35.02		
2od0A	105	44.30		
1w1oA	534	48.09	d.58.32.4,d.145.1.1	109071,109072
1t8kA	77	50.08	a.28.1.1	106666
1tzeE	98	51.04	d.93.1.1	40468
2amwA	83	52.72		
1khtA	192	56.15	c.37.1.1	84401
1k07A	263	57.67	d.157.1.1	77218
2q4wA	524	58.84		
1w5rA	278	63.94	d.3.1.5	120643
2h61A	92	64.65	a.39.1.2	136169
1oroA	213	66.83	c.61.1.1	34093
1svsA	353	67.11	c.37.1.8	106051
1x3zB	72	67.61	a.189.1.1	121674
1wvfA	520	68.44	d.58.32.1,d.145.1.1	121337,121338
2ovjA	201	70.76		
2gcuA	245	77.09		
3b9oA	440	77.76		
2v36B	193	77.84		
1qwoA	442	79.03	c.60.1.2	104620
1r1qA	100	79.05	d.93.1.1	104763
1qltA	560	79.24	d.58.32.1,d.145.1.1	39457,41720
2d74B	148	80.85		
1nmsA	249	82.39	c.17.1.1	85879
1kzlA	208	83.52	b.43.4.3,b.43.4.3	77635,77636
2g2kA	170	84.57		
1cp3A	277	85.44	c.17.1.1	30992
1cipA	353	86.58	a.66.1.1,c.37.1.8	18210,32093
1xm8A	254	86.61	d.157.1.2	115475
1nq7A	244	87.28	a.123.1.1	92047
2i2qA	137	87.50		
3byiA	214	87.76		
1am4A	199	89.08	a.116.1.1	19100
2gpiA	91	89.85