# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2plsA	86	9.46e-13		
2p4pA	86	5.32e-12		
2o1rA	81	6.19e-12		
2p13A	90	1.20e-11		
2nqwA	93	1.40e-11		
2pliA	91	1.51e-11		
2p3hA	101	2.33e-11		
2oaiA	94	1.51e-10		
2rk5A	87	3.69e-10		
1pvmA	184	0.6755	d.37.1.1,d.37.1.1,g.41.13.1	95171,95172,95173
1pbwA	216	1.347	a.116.1.1	19103
1f0kA	364	5.949	c.87.1.2	35465
2ngrB	234	7.767	a.116.1.1	19105
1eb6A	177	8.310	d.92.1.12	64895
2bvfA	459	18.58		
1tx4A	198	21.34	a.116.1.1	19098
3ce7A	107	22.14		
2pp6A	102	22.74		
2amwA	83	23.94		
2inpL	89	26.95		
2i0kA	561	27.28		
1tzeE	98	27.59	d.93.1.1	40468
2gcuA	245	28.96		
2ayuA	417	32.72	d.305.1.1	127571
2c1vA	338	34.48		
1ev7A	317	35.34	c.52.1.9	33315
2q4wA	524	36.85		
1oasA	322	40.88	c.79.1.1	35293
1khtA	192	46.26	c.37.1.1	84401
2p18A	311	52.72		
3ddyA	186	53.88		
1w5rA	278	54.78	d.3.1.5	120643
2h61A	92	55.51	a.39.1.2	136169
1svsA	353	56.57	c.37.1.8	106051
1x3zB	72	56.77	a.189.1.1	121674
1r1qA	100	57.10	d.93.1.1	104763
1t8kA	77	64.35	a.28.1.1	106666
1xm8A	254	67.17	d.157.1.2	115475
1fm0D	81	68.47	d.15.3.1	37642
2b49A	287	68.57		
2i75A	320	71.85		
2v36B	193	71.97		
2od0A	105	72.33		
2qnwA	82	72.49		
2ovjA	201	73.49		
2uuuA	584	75.40		
1w1oA	534	79.95	d.58.32.4,d.145.1.1	109071,109072
1oroA	213	80.23	c.61.1.1	34093
1cipA	353	80.74	a.66.1.1,c.37.1.8	18210,32093
1ed7A	45	84.44	b.72.2.1	27809
1a7tA	232	84.57	d.157.1.1	42041
2gpiA	91	86.70		
1fcjA	322	87.52	c.79.1.1	35289
1a1aA	107	88.19	d.93.1.1	40449
1qwoA	442	88.86	c.60.1.2	104620