# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2plsA	86	2.44e-10		
2nqwA	93	9.64e-10		
2p13A	90	1.39e-09		
2pliA	91	1.55e-09		
2o1rA	81	1.69e-09		
2p4pA	86	4.09e-09		
2oaiA	94	7.33e-09		
2p3hA	101	8.56e-09		
2rk5A	87	3.10e-08		
1pvmA	184	5.650	d.37.1.1,d.37.1.1,g.41.13.1	95171,95172,95173
1pbwA	216	9.99	a.116.1.1	19103
2ngrB	234	12.82	a.116.1.1	19105
3ce7A	107	20.30		
1tx4A	198	25.63	a.116.1.1	19098
2amwA	83	34.32		
1eb6A	177	37.81	d.92.1.12	64895
1vk8A	106	54.55	d.58.48.1	108636
2qa1A	500	57.88		
1ev7A	317	59.97	c.52.1.9	33315
1neeA	138	61.74	d.241.1.1,g.59.1.1	91841,91842
1q7fA	286	62.10	b.68.9.1	96036
1khtA	192	62.23	c.37.1.1	84401
2inpL	89	63.77		
1d5yA	292	67.02	a.4.1.8,a.4.1.8,d.60.1.2	16055,16056,39532
2r00A	336	71.02		
3bdrA	190	77.45		
1dv5A	80	80.00	a.28.1.3	59139
1nmsA	249	80.53	c.17.1.1	85879
1tiqA	180	82.34	d.108.1.1	107010
1cp3A	277	83.08	c.17.1.1	30992
2ovjA	201	85.16		
1t8kA	77	89.12	a.28.1.1	106666