# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2plsA	86	8.32e-13		
2p13A	90	2.39e-12		
2o1rA	81	5.04e-12		
2pliA	91	9.77e-12		
2nqwA	93	1.91e-11		
2oaiA	94	4.55e-11		
2p3hA	101	7.05e-10		
2rk5A	87	1.12e-09		
2p4pA	86	1.19e-09		
1wi5A	119	3.403	b.40.4.5	114661
2pp6A	102	6.028		
1wluA	136	10.60	d.38.1.5	121015
1div	149	11.20		
2fs2A	151	11.41	d.38.1.5	134003
1psuA	140	11.44	d.38.1.5	88285
2p18A	311	11.73		
2q0iA	303	13.11		
1a49A	530	13.35	b.58.1.1,c.1.12.1,c.49.1.1	27026,29255,33109
1at3A	247	14.33	b.57.1.1	27021
2ngrB	234	15.03	a.116.1.1	19105
2f0xA	148	15.15	d.38.1.5	132673
1hskA	326	21.89	d.145.1.2,d.146.1.1	61241,61242
1jyaA	130	22.11	d.198.1.1	67453
1v8cA	168	23.55	d.15.3.1,d.129.5.1	100495,100496
1k6zA	141	25.05	d.198.1.1	68247
2je6I	251	25.09		
2yxyA	115	26.53		
1j83A	180	30.24	b.18.1.12	66430
1j1yA	136	30.25	d.38.1.5	90776
2h4uA	145	31.72	d.38.1.5	136082
1p9yA	121	32.36	d.241.2.1	94402
2inpL	89	33.60		
1qh5A	260	34.22	d.157.1.2	42057
1fu1B	203	35.57	b.59.1.1,h.1.11.1	27077,45631
1i8dA	213	37.40	b.43.4.3,b.43.4.3	61953,61954
2qedA	258	37.48		
3b9jB	350	37.97		
1pczA	191	38.08	d.129.1.1,d.129.1.1	41292,41293
1vkyA	347	40.83	e.53.1.1	108696
1smlA	269	40.94	d.157.1.1	42053
1w1oA	534	47.49	d.58.32.4,d.145.1.1	109071,109072
2d68A	82	47.81		
1kzlA	208	48.70	b.43.4.3,b.43.4.3	77635,77636
1wh2A	78	55.68	d.76.1.1	114630
2ba1A	179	56.25		
1tx4A	198	57.73	a.116.1.1	19098
1go3E	187	58.77	b.40.4.5,d.230.1.1	83054,83055
2obwA	258	59.14		
2jheA	190	59.27		
2b6eA	146	62.84	d.38.1.5	127986
1xm8A	254	63.13	d.157.1.2	115475
2vgiA	528	63.56		
1fiqB	350	65.26	d.87.2.1,d.145.1.3	40229,41760
2vgfA	528	65.76		
2aioA	269	68.62	d.157.1.1	126829
1ass	159	69.67		
2d74B	148	69.67		
1t3qC	288	70.24	d.87.2.1,d.145.1.3	106371,106372
1bdyA	123	71.17	b.7.1.1	23190
1yemA	179	71.67	d.63.1.2	116646
1npsA	88	74.21	b.11.1.1	23622
1q47A	495	75.01	b.69.12.1	104532
1ifqA	138	77.17	d.110.4.1	62350
1ybdA	239	79.26	c.73.1.3	122884
1z9zA	60	85.13		
1kwgA	645	88.50	b.71.1.1,c.1.8.1,c.23.16.5	77561,77562,77563