# TARGET TR453 # Using neural net dunbrack-40pc-3157-t06-IDGaaH13-3-13-7-13-9-13-11-n_sep-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 20 (1 n_sep ) # The input amino acid frequencies were determined from # alignment TR453.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 136.399 # Pos AA G H I J K L M N P Q R S T U V W A B C D 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 D 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.018 0.003 0.034 0.937 2 E 0.016 0.001 0.001 0.001 0.004 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.075 0.006 0.070 0.817 3 I 0.068 0.004 0.004 0.003 0.006 0.003 0.005 0.006 0.001 0.001 0.001 0.001 0.003 0.011 0.017 0.011 0.092 0.006 0.054 0.706 4 V 0.011 0.004 0.001 0.001 0.018 0.005 0.008 0.008 0.001 0.001 0.004 0.005 0.192 0.418 0.072 0.022 0.155 0.002 0.019 0.054 5 Q 0.004 0.004 0.001 0.001 0.008 0.003 0.005 0.003 0.001 0.006 0.126 0.008 0.293 0.098 0.024 0.008 0.038 0.001 0.019 0.349 6 R 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.040 0.829 0.011 0.001 0.004 0.001 0.001 0.001 0.044 0.001 0.005 0.061 7 E 0.008 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.412 0.011 0.006 0.003 0.001 0.001 0.001 0.001 0.038 0.001 0.089 0.428 8 D 0.009 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.052 0.005 0.101 0.822 9 G 0.598 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.087 0.115 0.022 0.176 10 S 0.349 0.001 0.049 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.035 0.010 0.376 0.175 11 W 0.001 0.001 0.001 0.005 0.065 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.668 0.002 0.052 0.200 12 L 0.001 0.001 0.001 0.001 0.165 0.611 0.064 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.108 0.001 0.022 0.019 13 V 0.001 0.001 0.001 0.001 0.006 0.034 0.043 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.824 0.001 0.022 0.057 14 D 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.898 0.001 0.016 0.079 15 G 0.004 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.761 0.002 0.047 0.180 16 M 0.040 0.002 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.443 0.005 0.178 0.321 17 V 0.054 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.613 0.003 0.091 0.231 18 S 0.010 0.002 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.035 0.002 0.138 0.807 19 L 0.045 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.373 0.002 0.040 0.528 20 D 0.002 0.016 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.131 0.847 21 R 0.097 0.031 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.006 0.445 0.417 22 F 0.049 0.813 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.016 0.119 23 R 0.058 0.869 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.007 0.060 24 E 0.049 0.856 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.005 0.077 25 F 0.168 0.730 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.040 0.002 0.057 26 F 0.125 0.751 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.044 0.005 0.057 27 E 0.157 0.387 0.070 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.028 0.068 0.035 0.249 28 L 0.140 0.151 0.157 0.011 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.069 0.032 0.052 0.384 29 E 0.116 0.072 0.020 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.126 0.023 0.071 0.560 30 A 0.128 0.041 0.035 0.005 0.001 0.001 0.002 0.002 0.001 0.001 0.005 0.002 0.005 0.008 0.006 0.003 0.113 0.012 0.087 0.543 31 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.003 0.990 32 L 0.041 0.009 0.004 0.002 0.001 0.001 0.001 0.002 0.013 0.005 0.006 0.003 0.005 0.006 0.009 0.005 0.108 0.005 0.148 0.627 33 P 0.012 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.009 0.001 0.011 0.961 34 G 0.073 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.006 0.010 0.002 0.007 0.003 0.002 0.001 0.039 0.006 0.101 0.737 35 E 0.473 0.012 0.004 0.001 0.001 0.001 0.001 0.001 0.005 0.011 0.003 0.001 0.002 0.001 0.001 0.001 0.021 0.010 0.097 0.358 36 A 0.049 0.018 0.001 0.001 0.001 0.001 0.001 0.001 0.012 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.016 0.003 0.082 0.814 37 G 0.074 0.032 0.002 0.001 0.006 0.002 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.029 0.021 0.094 0.727 38 G 0.420 0.018 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.015 0.033 0.065 0.435 39 N 0.138 0.017 0.019 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.020 0.012 0.244 0.543 40 I 0.034 0.030 0.010 0.002 0.003 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.058 0.005 0.062 0.788 41 H 0.022 0.076 0.003 0.001 0.030 0.072 0.042 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.237 0.006 0.234 0.267 42 T 0.041 0.116 0.007 0.001 0.005 0.006 0.020 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.057 0.010 0.148 0.583 43 L 0.039 0.413 0.003 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.230 0.008 0.054 0.247 44 A 0.028 0.547 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.131 0.004 0.094 0.193 45 G 0.013 0.597 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.125 0.010 0.049 0.200 46 V 0.012 0.865 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.052 0.006 0.011 0.051 47 M 0.010 0.944 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.025 0.002 0.002 0.016 48 L 0.004 0.964 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.019 0.002 0.001 0.010 49 Y 0.012 0.962 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.015 0.005 0.001 0.005 50 Q 0.034 0.908 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.015 0.018 0.003 0.020 51 L 0.067 0.827 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.013 0.045 0.005 0.032 52 G 0.374 0.186 0.025 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.025 0.227 0.018 0.142 53 R 0.156 0.036 0.482 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.025 0.043 0.243 54 V 0.088 0.035 0.052 0.007 0.001 0.001 0.001 0.001 0.002 0.002 0.002 0.001 0.001 0.002 0.003 0.001 0.104 0.014 0.081 0.605 55 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.008 0.981 56 S 0.021 0.006 0.003 0.001 0.002 0.001 0.002 0.001 0.004 0.006 0.003 0.001 0.001 0.001 0.001 0.001 0.066 0.004 0.191 0.687 57 V 0.089 0.012 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.158 0.004 0.077 0.646 58 T 0.075 0.047 0.001 0.001 0.002 0.001 0.001 0.002 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.336 0.011 0.181 0.336 59 D 0.258 0.010 0.003 0.001 0.002 0.001 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.002 0.185 0.042 0.096 0.392 60 R 0.123 0.015 0.026 0.004 0.002 0.004 0.002 0.003 0.001 0.001 0.001 0.002 0.004 0.027 0.017 0.011 0.079 0.009 0.164 0.506 61 F 0.013 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.491 0.244 0.017 0.004 0.155 0.003 0.014 0.042 62 E 0.005 0.014 0.002 0.002 0.014 0.006 0.012 0.002 0.004 0.119 0.040 0.007 0.043 0.015 0.009 0.006 0.281 0.004 0.060 0.354 63 W 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.815 0.066 0.002 0.001 0.001 0.001 0.001 0.001 0.072 0.001 0.006 0.027 64 N 0.013 0.017 0.001 0.001 0.001 0.001 0.001 0.001 0.062 0.002 0.002 0.002 0.001 0.001 0.001 0.001 0.128 0.006 0.112 0.652 65 G 0.023 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.094 0.021 0.057 0.801 66 F 0.655 0.001 0.063 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.048 0.036 0.049 0.147 67 S 0.011 0.001 0.001 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.722 0.002 0.134 0.124 68 F 0.001 0.001 0.001 0.001 0.759 0.014 0.010 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.113 0.001 0.013 0.085 69 E 0.001 0.001 0.001 0.001 0.018 0.255 0.074 0.019 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.614 0.001 0.011 0.005 70 V 0.001 0.001 0.001 0.001 0.002 0.002 0.012 0.010 0.001 0.001 0.001 0.001 0.003 0.012 0.078 0.042 0.441 0.001 0.023 0.372 71 V 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.005 0.003 0.002 0.969 0.001 0.004 0.011 72 D 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.014 0.048 0.062 0.006 0.112 0.044 0.075 0.014 0.163 0.001 0.053 0.401 73 M 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.011 0.005 0.010 0.002 0.002 0.002 0.001 0.001 0.689 0.001 0.055 0.216 74 D 0.005 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.213 0.039 0.013 0.002 0.001 0.001 0.001 0.001 0.106 0.002 0.286 0.328 75 R 0.131 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.142 0.034 0.079 0.605 76 T 0.032 0.011 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.038 0.019 0.521 0.375 77 R 0.434 0.008 0.012 0.003 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.108 0.089 0.156 0.181 78 V 0.031 0.041 0.033 0.007 0.058 0.042 0.014 0.004 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.191 0.006 0.175 0.395 79 D 0.004 0.006 0.001 0.001 0.141 0.065 0.052 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.602 0.004 0.034 0.078 80 K 0.015 0.008 0.001 0.001 0.004 0.043 0.050 0.013 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.509 0.004 0.035 0.312 81 I 0.005 0.003 0.001 0.001 0.001 0.001 0.003 0.003 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.003 0.908 0.002 0.016 0.050 82 L 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.007 0.003 0.920 0.001 0.008 0.048 83 V 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.009 0.026 0.028 0.009 0.818 0.001 0.017 0.080 84 Q 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.002 0.001 0.007 0.011 0.012 0.006 0.871 0.001 0.017 0.065 85 R 0.005 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.012 0.007 0.006 0.003 0.003 0.004 0.006 0.003 0.346 0.002 0.054 0.545 86 H 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.003 0.005 0.002 0.001 0.001 0.002 0.001 0.135 0.002 0.072 0.764 87 H 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.025 0.001 0.023 0.945