# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2plsA	86	6.46e-15		
2o1rA	81	2.49e-14		
2pliA	91	2.95e-14		
2r2zA	93	3.50e-14		
2p13A	90	6.76e-14		
2nqwA	93	1.11e-13		
2p4pA	86	1.39e-13		
2rk5A	87	9.35e-13		
2oaiA	94	1.64e-12		
2p3hA	101	1.86e-12		
3ddjA	296	0.01488		
2vfrA	422	0.5938		
2yvsA	219	0.8959		
1pbwA	216	0.9567	a.116.1.1	19103
1w1oA	534	4.838	d.58.32.4,d.145.1.1	109071,109072
1wviA	257	5.460	c.108.1.14	114915
1wvfA	520	5.698	d.58.32.1,d.145.1.1	121337,121338
1zr6A	503	6.297		
2uuuA	584	10.06		
1uf3A	228	14.38	d.159.1.6	99317
2q4wA	524	16.52		
2giaB	187	19.82	d.18.1.4	135222
2pp6A	102	20.81		
1nd6A	354	32.39	c.60.1.2	80407
2dkoA	146	34.30		
1gxyA	226	37.38	d.166.1.3	76380
1i8dA	213	37.90	b.43.4.3,b.43.4.3	61953,61954
2ipiA	521	39.84		
3ddyA	186	40.87		
1t8kA	77	43.99	a.28.1.1	106666
2d74B	148	45.99		
2q5wD	77	46.59		
2qnwA	82	47.56		
1xkpC	143	47.96	d.198.1.1	122088
2qv2A	342	51.21		
2b0cA	206	53.65	c.108.1.2	127633
2mbrA	340	57.12	d.145.1.2,d.146.1.1	41749,41762
2exrA	524	61.33		
1yzxA	226	62.42		
1xvaA	292	62.82	c.66.1.5	34183
1ei7A	158	63.41	a.24.5.1	16584
2ctdA	96	63.95	g.37.1.1,g.37.1.1	130792,130793
2gcuA	245	64.02		
2i75A	320	64.96		
2obwA	258	65.58		
1e8gA	560	66.57	d.58.32.1,d.145.1.1	39455,41718
2posA	94	66.92		
2cx4A	164	67.53	c.47.1.10	130973
1hplA	449	68.77	b.12.1.2,c.69.1.19	23639,34787
2ehsA	77	69.42		
2qxfA	482	69.81		
1uj2A	252	72.09	c.37.1.6	99452
1pa1A	310	72.09	c.45.1.2	94404
1jyoA	130	72.44	d.198.1.1	67483
2nyiA	195	73.35		
2hc1A	291	73.46		
1neeA	138	74.66	d.241.1.1,g.59.1.1	91841,91842
2p18A	311	75.93		
1xebA	150	77.19	d.108.1.1	115219
1vpkA	378	77.91	d.131.1.1,d.131.1.1,d.131.1.1	113963,113964,113965
2qedA	258	77.92		
2bvfA	459	81.46		
1kzlA	208	81.67	b.43.4.3,b.43.4.3	77635,77636
1w85I	49	82.01	a.9.1.1	114347
1ahlA	49	82.02	g.9.1.1	44601
1rlmA	271	83.50	c.108.1.10	111860
2amwA	83	85.13		
2z3xA	63	88.30		
2b49A	287	88.73