# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2plsA	86	2.55e-12		
2o1rA	81	3.55e-12		
2r2zA	93	4.91e-12		
2p4pA	86	5.68e-12		
2pliA	91	7.75e-12		
2nqwA	93	9.89e-12		
2p13A	90	2.04e-11		
2rk5A	87	5.08e-11		
2p3hA	101	1.06e-10		
2oaiA	94	1.17e-10		
3ddjA	296	0.1007		
2vfrA	422	0.3602		
2yvsA	219	1.028		
1pbwA	216	1.231	a.116.1.1	19103
1w1oA	534	4.924	d.58.32.4,d.145.1.1	109071,109072
1wviA	257	10.27	c.108.1.14	114915
1wvfA	520	10.92	d.58.32.1,d.145.1.1	121337,121338
1zr6A	503	14.57		
1i8dA	213	17.87	b.43.4.3,b.43.4.3	61953,61954
2pp6A	102	18.58		
1kzlA	208	19.45	b.43.4.3,b.43.4.3	77635,77636
3ddyA	186	20.83		
2qv2A	342	25.12		
2ipiA	521	27.13		
2mbrA	340	33.82	d.145.1.2,d.146.1.1	41749,41762
1gxyA	226	37.87	d.166.1.3	76380
1xebA	150	42.61	d.108.1.1	115219
1uf3A	228	43.12	d.159.1.6	99317
2ctdA	96	43.26	g.37.1.1,g.37.1.1	130792,130793
2q4wA	524	44.13		
2dkoA	146	44.85		
2giaB	187	48.48	d.18.1.4	135222
2d74B	148	48.83		
2q5wD	77	48.89		
1uxy	340	50.83		
1rlmA	271	51.21	c.108.1.10	111860
2uuuA	584	52.77		
2cx4A	164	53.41	c.47.1.10	130973
1tx4A	198	53.67	a.116.1.1	19098
1uxyA	340	53.94	d.145.1.2,d.146.1.1	41748,41761
2ovjA	201	54.16		
2gcuA	245	55.12		
2riqA	160	58.08		
2b0cA	206	62.27	c.108.1.2	127633
1nd6A	354	62.29	c.60.1.2	80407
2ce0A	105	62.66		
1neeA	138	63.96	d.241.1.1,g.59.1.1	91841,91842
2qxfA	482	66.59		
2hc1A	291	69.06		
2obiA	183	69.99		
2qnwA	82	73.08		
2bvfA	459	75.07		
1e8gA	560	77.94	d.58.32.1,d.145.1.1	39455,41718
2ywnA	157	77.94		
1t8kA	77	79.42	a.28.1.1	106666
1ve1A	304	79.70	c.79.1.1	120007
2z3xA	63	81.92		
1zkdA	387	82.46	c.66.1.52	125184
1y7lA	316	88.18	c.79.1.1	122695
2amwA	83	89.12		
1w85I	49	89.94	a.9.1.1	114347