# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2plsA 86 1.26e-16 2p13A 90 3.12e-16 2o1rA 81 4.95e-16 2pliA 91 8.74e-16 2r2zA 93 2.09e-15 2oaiA 94 3.72e-15 2nqwA 93 8.65e-15 2p4pA 86 1.71e-14 2rk5A 87 3.80e-14 2p3hA 101 5.03e-14 3ddjA 296 0.03128 2vfrA 422 0.2437 2yvsA 219 0.4809 1wviA 257 2.018 c.108.1.14 114915 1w1oA 534 2.411 d.58.32.4,d.145.1.1 109071,109072 3ddyA 186 3.620 1kzlA 208 3.717 b.43.4.3,b.43.4.3 77635,77636 1i8dA 213 3.759 b.43.4.3,b.43.4.3 61953,61954 1xm8A 254 4.241 d.157.1.2 115475 1zr6A 503 4.264 2ipiA 521 5.009 2obwA 258 5.913 2pp6A 102 6.571 1pbwA 216 6.921 a.116.1.1 19103 1vmeA 410 7.276 c.23.5.1,d.157.1.3 108893,108894 3ce7A 107 9.879 2d74B 148 9.900 1wvfA 520 9.940 d.58.32.1,d.145.1.1 121337,121338 2g2kA 170 11.54 2qxfA 482 11.64 1t8kA 77 13.91 a.28.1.1 106666 2qnwA 82 14.05 2qedA 258 14.06 1rlmA 271 16.16 c.108.1.10 111860 2bvfA 459 16.52 1t6sA 162 18.22 a.4.5.60,a.4.5.60 112271,112272 2o0tA 467 19.34 1fxxA 482 20.77 c.55.3.5 33726 1ed7A 45 20.80 b.72.2.1 27809 1fe0A 68 22.16 d.58.17.1 39345 1xkpC 143 23.52 d.198.1.1 122088 1oacA 727 23.62 b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24390,38007,38008,40003 1zud2 66 23.92 2ehsA 77 24.33 1ev7A 317 28.03 c.52.1.9 33315 3cwiA 78 29.39 1lnsA 763 29.49 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1k07A 263 31.80 d.157.1.1 77218 2b49A 287 33.49 1jyoA 130 33.74 d.198.1.1 67483 2h5uA 499 34.06 2q5wD 77 34.24 1vkuA 100 34.44 a.28.1.1 108690 2qt6A 498 34.85 1yrkA 126 35.60 2gcuA 245 36.79 1w94A 156 37.17 c.51.1.2 120774 1cc8A 73 37.20 d.58.17.1 39343 1w5rA 278 37.68 d.3.1.5 120643 3bjuA 521 38.11 1kskA 234 38.60 d.66.1.5,d.265.1.3 72920,90389 1xv2A 237 39.08 d.290.1.1 116076 1i88A 389 42.50 c.95.1.2,c.95.1.2 66070,66071 1uf3A 228 43.33 d.159.1.6 99317 2je0A 149 43.45 2r14A 377 46.75 2ctdA 96 46.83 g.37.1.1,g.37.1.1 130792,130793 1c02A 166 47.11 a.24.10.2 16633 2cx4A 164 47.65 c.47.1.10 130973 1lu4A 136 47.69 c.47.1.10 91124 1qh5A 260 49.38 d.157.1.2 42057 1w24A 182 49.97 d.159.1.7 120579 1ulyA 192 50.18 a.4.5.58 113297 1wdvA 152 52.95 d.116.1.1 114539 2afdA 88 53.17 1uxy 340 53.41 1rm6B 324 53.80 d.87.2.1,d.145.1.3 111874,111875 1r1uA 106 53.88 a.4.5.5 104771 1r1tA 122 54.78 a.4.5.5 104769 1e3dA 266 56.02 e.19.1.1 59188 1q9uA 130 57.20 d.129.7.1 96314 1hfuA 503 57.97 b.6.1.3,b.6.1.3,b.6.1.3 65827,65828,65829 2uuuA 584 58.91 2oauA 306 59.78 b.38.1.3,d.58.43.1,f.34.1.1 138978,138979,138980 1chkA 238 60.13 d.2.1.7 36999 1zkdA 387 60.32 c.66.1.52 125184 2z14A 133 60.53 1x19A 359 60.95 2p3eA 420 61.42 2a4vA 159 62.45 c.47.1.10 126163 1cipA 353 62.92 a.66.1.1,c.37.1.8 18210,32093 1u3oA 82 63.43 2amwA 83 64.78 2aioA 269 65.56 d.157.1.1 126829 1svsA 353 66.58 c.37.1.8 106051 2fclA 169 66.73 d.218.1.11 133273 2ywnA 157 67.02 2btiA 63 67.10 1tygB 87 67.10 d.15.3.2 107455 1u2wA 122 67.52 a.4.5.5 119487 1yudA 170 67.66 b.82.1.16 124046 1w2fA 276 68.48 d.143.1.3 109125 1y89A 238 70.30 2q4wA 524 72.50 1zcaA 359 73.14 a.66.1.1,c.37.1.8 124897,124898 1of8A 370 74.28 c.1.10.4 92819 1e8gA 560 76.65 d.58.32.1,d.145.1.1 39455,41718 1ub9A 100 77.48 a.4.5.28 99159 1vioA 243 79.13 d.265.1.3,d.66.1.5 100762,100763 1oz2A 331 80.35 b.34.9.3,b.34.9.3,b.34.9.3 93781,93782,93783 1aisA 182 81.43 d.129.1.1,d.129.1.1 41288,41289 1zn6A 227 81.52 d.303.1.1 125373 2hrgA 496 81.78 2hdvA 111 82.82 3broA 141 83.22 2o0yA 260 83.71 1nd6A 354 84.07 c.60.1.2 80407 1sfxA 109 84.79 a.4.5.50 105505 1znpA 154 85.01 b.82.1.16 125394 1fm0D 81 85.66 d.15.3.1 37642 2d1hA 109 88.57 a.4.5.50 131125 2eixA 243 89.64