# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2plsA	86	7.32e-14		
2o1rA	81	1.41e-13		
2pliA	91	1.53e-13		
2p13A	90	2.38e-13		
2r2zA	93	3.68e-13		
2p4pA	86	7.01e-13		
2oaiA	94	9.44e-13		
2nqwA	93	1.00e-12		
2p3hA	101	4.82e-12		
2rk5A	87	1.41e-11		
3ddjA	296	0.03476		
1pbwA	216	0.8830	a.116.1.1	19103
2vfrA	422	1.289		
2yvsA	219	1.336		
2pp6A	102	11.93		
1w1oA	534	15.45	d.58.32.4,d.145.1.1	109071,109072
3ddyA	186	15.93		
1i8dA	213	18.30	b.43.4.3,b.43.4.3	61953,61954
1wviA	257	18.52	c.108.1.14	114915
1wvfA	520	20.61	d.58.32.1,d.145.1.1	121337,121338
1s9uA	207	32.19	a.184.1.1	105390
1zr6A	503	34.07		
2ovjA	201	35.32		
1kzlA	208	37.84	b.43.4.3,b.43.4.3	77635,77636
1gxyA	226	39.29	d.166.1.3	76380
1hplA	449	42.36	b.12.1.2,c.69.1.19	23639,34787
1uf3A	228	44.75	d.159.1.6	99317
2gcuA	245	46.32		
1y3nA	490	46.67	c.94.1.1	122597
1xkpC	143	47.32	d.198.1.1	122088
2qv2A	342	47.96		
1c02A	166	48.06	a.24.10.2	16633
3bjuA	521	48.29		
1tx4A	198	49.62	a.116.1.1	19098
1ei7A	158	52.02	a.24.5.1	16584
1uj2A	252	52.37	c.37.1.6	99452
2giaB	187	53.04	d.18.1.4	135222
1w85I	49	53.94	a.9.1.1	114347
2cx4A	164	56.31	c.47.1.10	130973
2obwA	258	56.79		
2i51A	195	57.00		
2qxfA	482	59.89		
1t8kA	77	61.62	a.28.1.1	106666
2q5wD	77	62.22		
2hc1A	291	63.10		
2uuuA	584	64.85		
1zkdA	387	64.96	c.66.1.52	125184
1yzxA	226	66.03		
1ahlA	49	70.07	g.9.1.1	44601
2q4wA	524	70.82		
1wubA	178	73.73	b.61.6.1	114891
1nd6A	354	73.74	c.60.1.2	80407
1hkxA	147	77.38	d.17.4.7	83567
1xm8A	254	78.93	d.157.1.2	115475
1r5rA	119	79.53	a.39.2.1	97104
1uzxA	169	80.42	d.20.1.2	100238
2ctdA	96	81.18	g.37.1.1,g.37.1.1	130792,130793
1n1cA	217	81.26	a.184.1.1	85254
2ux0A	143	83.00		
2fgsA	179	83.79		
1xebA	150	83.83	d.108.1.1	115219
1qh5A	260	83.85	d.157.1.2	42057
1w5rA	278	84.56	d.3.1.5	120643
2bvfA	459	85.23		
2i75A	320	87.19