# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2plsA	86	2.90e-14		
2o1rA	81	5.75e-14		
2pliA	91	5.94e-14		
2p13A	90	9.45e-14		
2p4pA	86	1.02e-13		
2r2zA	93	1.52e-13		
2oaiA	94	3.93e-13		
2nqwA	93	6.52e-13		
2p3hA	101	1.09e-12		
2rk5A	87	3.44e-12		
3ddjA	296	0.02019		
1pbwA	216	0.8303	a.116.1.1	19103
2vfrA	422	0.9592		
2yvsA	219	1.410		
1w1oA	534	10.75	d.58.32.4,d.145.1.1	109071,109072
1wvfA	520	15.14	d.58.32.1,d.145.1.1	121337,121338
1s9uA	207	19.27	a.184.1.1	105390
1wviA	257	20.12	c.108.1.14	114915
2pp6A	102	20.64		
2ovjA	201	25.98		
3ddyA	186	30.43		
1uf3A	228	32.53	d.159.1.6	99317
2qv2A	342	35.14		
1i8dA	213	35.33	b.43.4.3,b.43.4.3	61953,61954
1zkdA	387	35.75	c.66.1.52	125184
1tx4A	198	35.93	a.116.1.1	19098
2cx4A	164	37.32	c.47.1.10	130973
2q4wA	524	39.00		
1gxyA	226	40.21	d.166.1.3	76380
1c02A	166	40.70	a.24.10.2	16633
1ei7A	158	41.57	a.24.5.1	16584
3bjuA	521	41.72		
1uj2A	252	43.77	c.37.1.6	99452
2q5wD	77	45.91		
1t8kA	77	47.44	a.28.1.1	106666
1hplA	449	49.14	b.12.1.2,c.69.1.19	23639,34787
2qxfA	482	50.67		
1ahlA	49	53.04	g.9.1.1	44601
2i51A	195	53.59		
1w85I	49	53.87	a.9.1.1	114347
2nyiA	195	54.27		
2giaB	187	58.71	d.18.1.4	135222
2ywnA	157	61.34		
1yzxA	226	61.57		
2gcuA	245	62.19		
3cwiA	78	65.70		
1kzlA	208	66.60	b.43.4.3,b.43.4.3	77635,77636
1r5rA	119	66.97	a.39.2.1	97104
1zr6A	503	67.54		
2uuuA	584	71.82		
1w5rA	278	72.44	d.3.1.5	120643
1n1cA	217	72.86	a.184.1.1	85254
1xm8A	254	74.29	d.157.1.2	115475
2qnwA	82	74.31		
2ctdA	96	76.84	g.37.1.1,g.37.1.1	130792,130793
1nd6A	354	82.00	c.60.1.2	80407
1qv1A	195	82.12	a.39.1.5	96347
1ve1A	304	82.63	c.79.1.1	120007
2ngrB	234	84.59	a.116.1.1	19105
1xebA	150	85.73	d.108.1.1	115219
2j6pA	152	86.29		
2ce0A	105	86.87		
2bvfA	459	87.86		
1v2aA	210	88.84	a.45.1.1,c.47.1.5	100263,100264
2a4vA	159	89.12	c.47.1.10	126163
1kjsA	74	89.55	a.50.1.1	17792