# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2plsA	86	2.95e-13		
2pliA	91	3.80e-13		
2o1rA	81	4.22e-13		
2p4pA	86	7.39e-13		
2p13A	90	7.49e-13		
2r2zA	93	9.92e-13		
2nqwA	93	3.54e-12		
2oaiA	94	3.83e-12		
2p3hA	101	7.53e-12		
2rk5A	87	1.79e-11		
3ddjA	296	0.03932		
1pbwA	216	0.8087	a.116.1.1	19103
2vfrA	422	1.261		
2yvsA	219	1.468		
1w1oA	534	15.81	d.58.32.4,d.145.1.1	109071,109072
1s9uA	207	19.94	a.184.1.1	105390
1wvfA	520	20.90	d.58.32.1,d.145.1.1	121337,121338
2ovjA	201	21.10		
2qv2A	342	21.85		
1wviA	257	22.17	c.108.1.14	114915
1tx4A	198	23.13	a.116.1.1	19098
2pp6A	102	23.87		
1ei7A	158	26.87	a.24.5.1	16584
1zkdA	387	36.88	c.66.1.52	125184
2cx4A	164	37.74	c.47.1.10	130973
1c02A	166	40.50	a.24.10.2	16633
3ddyA	186	41.22		
1i8dA	213	42.59	b.43.4.3,b.43.4.3	61953,61954
2q5wD	77	45.19		
2nyiA	195	45.24		
2qxfA	482	45.71		
1w85I	49	47.95	a.9.1.1	114347
1kjsA	74	50.00	a.50.1.1	17792
2ngrB	234	50.47	a.116.1.1	19105
3bjuA	521	50.93		
1uf3A	228	53.69	d.159.1.6	99317
1gxyA	226	55.11	d.166.1.3	76380
2uuuA	584	58.21		
1r5rA	119	58.46	a.39.2.1	97104
2q4wA	524	59.47		
1uj2A	252	63.65	c.37.1.6	99452
1n1cA	217	64.64	a.184.1.1	85254
1uzxA	169	65.28	d.20.1.2	100238
2j6pA	152	67.47		
1t8kA	77	68.76	a.28.1.1	106666
2ywnA	157	69.22		
1ahlA	49	69.27	g.9.1.1	44601
1zr6A	503	69.33		
2i51A	195	72.91		
3ci3A	194	73.05		
1w5rA	278	74.26	d.3.1.5	120643
2gcuA	245	81.17		
2pqmA	343	82.97		
1kzlA	208	83.93	b.43.4.3,b.43.4.3	77635,77636
2veoA	441	84.38		
1hplA	449	85.90	b.12.1.2,c.69.1.19	23639,34787
2ctdA	96	87.23	g.37.1.1,g.37.1.1	130792,130793
1ve1A	304	89.01	c.79.1.1	120007