# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2plsA	86	3.41e-10		
2pliA	91	5.07e-10		
2o1rA	81	9.74e-10		
2r2zA	93	2.31e-09		
2p13A	90	2.57e-09		
2p4pA	86	2.64e-09		
2nqwA	93	5.18e-09		
2rk5A	87	7.78e-09		
2p3hA	101	1.09e-08		
2oaiA	94	1.17e-08		
3ddjA	296	1.559		
1wviA	257	9.500	c.108.1.14	114915
1pbwA	216	11.52	a.116.1.1	19103
1neeA	138	18.26	d.241.1.1,g.59.1.1	91841,91842
2yvsA	219	19.14		
1tx4A	198	22.17	a.116.1.1	19098
2d74B	148	26.86		
2pp6A	102	29.06		
2riqA	160	29.30		
2g2kA	170	29.33		
3ci3A	194	30.32		
2ovjA	201	46.47		
2ngrB	234	47.35	a.116.1.1	19105
1t6sA	162	47.76	a.4.5.60,a.4.5.60	112271,112272
2dkoA	146	48.64		
1tibA	269	48.69	c.69.1.17	34738
1u2wA	122	50.66	a.4.5.5	119487
1gqpA	221	50.95	b.18.1.9	70372
1xm8A	254	53.13	d.157.1.2	115475
1fxxA	482	53.93	c.55.3.5	33726
2qxfA	482	54.34		
2o3aA	178	56.69		
1lkkA	105	62.08	d.93.1.1	40412
3ddyA	186	66.01		
1tca	317	71.74		
2boqA	331	73.16		
3ce7A	107	75.77		
1i8dA	213	79.41	b.43.4.3,b.43.4.3	61953,61954
2osaA	202	80.02		
1r5rA	119	80.61	a.39.2.1	97104
3byiA	214	82.45		
1llpA	343	83.11	a.93.1.1	18578
2vfrA	422	84.08		
1r1uA	106	84.26	a.4.5.5	104771
1akyA	220	84.51	c.37.1.1,g.41.2.1	31896,45197
1o4rA	108	85.83	d.93.1.1	92469
1ei7A	158	87.81	a.24.5.1	16584
2idxA	196	88.17		
1b80A	351	88.44	a.93.1.1	18579
1cnv	299	89.63