# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2plsA	86	1.32e-11		
2nqwA	93	1.71e-11		
2r2zA	93	2.63e-11		
2pliA	91	2.73e-11		
2o1rA	81	3.59e-11		
2p13A	90	4.26e-11		
2p4pA	86	2.43e-10		
2p3hA	101	3.72e-10		
2oaiA	94	6.15e-10		
2rk5A	87	8.80e-10		
3ddjA	296	0.1115		
1pbwA	216	0.8827	a.116.1.1	19103
2yvsA	219	1.490		
2vfrA	422	1.506		
1w1oA	534	10.42	d.58.32.4,d.145.1.1	109071,109072
1wvfA	520	15.56	d.58.32.1,d.145.1.1	121337,121338
3ddyA	186	16.17		
2qxfA	482	20.00		
1i8dA	213	20.21	b.43.4.3,b.43.4.3	61953,61954
1kzlA	208	25.34	b.43.4.3,b.43.4.3	77635,77636
1w5rA	278	25.53	d.3.1.5	120643
1wviA	257	26.05	c.108.1.14	114915
2pp6A	102	31.58		
2giaB	187	39.44	d.18.1.4	135222
1xkpC	143	41.08	d.198.1.1	122088
2ovjA	201	42.41		
1hkxA	147	43.95	d.17.4.7	83567
1zr6A	503	45.25		
2qv2A	342	45.98		
1zkdA	387	46.28	c.66.1.52	125184
1ei7A	158	49.35	a.24.5.1	16584
2fgsA	179	53.10		
2q5wD	77	53.40		
2d74B	148	54.96		
1rlmA	271	55.79	c.108.1.10	111860
1uj2A	252	56.50	c.37.1.6	99452
1yrkA	126	57.12		
1hplA	449	58.38	b.12.1.2,c.69.1.19	23639,34787
2gcuA	245	66.59		
2cx4A	164	69.33	c.47.1.10	130973
2uuuA	584	70.06		
1fxxA	482	70.61	c.55.3.5	33726
2ux0A	143	72.02		
1tx4A	198	73.05	a.116.1.1	19098
1gxyA	226	76.49	d.166.1.3	76380
1t8kA	77	77.38	a.28.1.1	106666
2qnwA	82	78.55		
2b49A	287	79.54		
1xm8A	254	80.25	d.157.1.2	115475
1jyoA	130	83.41	d.198.1.1	67483
1wubA	178	85.64	b.61.6.1	114891