# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2p4pA 86 1.58e-13 2plsA 86 4.35e-13 2pliA 91 8.10e-13 2p13A 90 8.50e-13 2o1rA 81 9.44e-13 2r2zA 93 1.30e-12 2nqwA 93 1.56e-12 2oaiA 94 1.09e-11 2p3hA 101 1.59e-11 2rk5A 87 2.89e-11 3ddjA 296 0.03689 2vfrA 422 0.1572 1yarA 233 0.8527 d.153.1.4 122837 1pbwA 216 0.9301 a.116.1.1 19103 3c3dA 311 1.292 2yvsA 219 1.383 2qedA 258 1.765 1l9cA 389 6.147 c.3.1.2,d.16.1.3 77815,77816 1y7lA 316 6.688 c.79.1.1 122695 1lpjA 133 7.559 b.60.1.2 78123 1jlwA 219 8.132 a.45.1.1,c.47.1.5 71741,71742 1w1oA 534 10.97 d.58.32.4,d.145.1.1 109071,109072 1k1eA 180 12.63 c.108.1.5 67995 2oh5A 248 13.34 2q4wA 524 13.54 2cx4A 164 15.45 c.47.1.10 130973 1n0wA 243 15.63 c.37.1.11 79772 2isnA 364 16.06 3b9jC 763 16.97 2uuuA 584 18.08 1neeA 138 18.13 d.241.1.1,g.59.1.1 91841,91842 1gxyA 226 19.16 d.166.1.3 76380 2gf3A 389 19.19 c.3.1.2,d.16.1.3 135070,135071 2hhjA 267 19.45 c.60.1.1 136497 1mxsA 225 20.18 c.1.10.1 91494 1hs6A 611 25.04 a.118.1.7,b.98.1.1,d.92.1.13 61233,61234,61235 1o59A 355 25.97 b.18.1.22,b.18.1.22 92495,92496 2k3aA 155 27.65 2ffeA 311 27.98 c.143.1.1 133381 1w5rA 278 28.05 d.3.1.5 120643 2nxvA 249 30.52 1rypL 212 30.64 d.153.1.4 41880 1qh5A 260 31.81 d.157.1.2 42057 2hxvA 360 32.04 c.71.1.2,c.97.1.2 136859,136860 1ql0A 241 32.47 d.4.1.2 37139 1tq6A 413 32.56 c.37.1.8 107202 2c0nA 203 34.42 2pqmA 343 34.46 2ovjA 201 34.90 2vgaA 207 34.99 1k07A 263 37.86 d.157.1.1 77218 2ywiA 196 39.19 1nnsA 326 40.40 c.88.1.1 85910 1erjA 393 40.62 b.69.4.1 27660 1w24A 182 41.11 d.159.1.7 120579 1rwiA 270 42.17 b.68.9.1 97987 1uj2A 252 42.74 c.37.1.6 99452 2fauA 341 43.04 3bvxA 1045 43.17 1pxzA 346 45.79 b.80.1.1 111643 1ei7A 158 46.17 a.24.5.1 16584 2vg2A 284 47.22 1np6A 174 48.72 c.37.1.10 85954 1a0iA 348 51.20 b.40.4.6,d.142.2.1 25363,41577 2fs3A 282 51.37 2j8gA 339 51.75 2v05A 311 55.03 2r6uA 148 55.61 2obwA 258 56.63 2f57A 317 57.31 1pc3A 350 58.03 c.94.1.1 104102 1e3dA 266 58.60 e.19.1.1 59188 2po1B 277 60.22 1nstA 325 60.88 c.37.1.5 31951 2dnjA 260 61.25 d.151.1.1 41790 1ddgA 374 62.72 b.43.4.1,c.25.1.4 25671,31559 2gn0A 342 63.25 1j0dA 341 63.44 c.79.1.1 83902 2g7bA 137 65.63 3c4zA 543 67.16 1eb6A 177 67.29 d.92.1.12 64895 2hrgA 496 67.29 1s9jA 341 67.72 d.144.1.7 112049 1o7jA 327 68.66 c.88.1.1 81140 2qalC 232 71.75 2d1eA 248 72.75 1t7lA 766 73.69 2a9gA 418 75.32 d.126.1.4 126435 2asbA 251 75.77 b.40.4.5,d.52.3.1,d.52.3.1 127244,127245,127246 1zfjA 491 76.15 c.1.5.1,d.37.1.1,d.37.1.1 28638,38540,38541 1ftpA 133 76.21 b.60.1.2 27199 3cpxA 321 77.05 1t8kA 77 77.60 a.28.1.1 106666 1hfeL 421 78.66 c.96.1.1,d.58.1.5 36018,39001 2c43A 323 80.08 2p18A 311 80.09 1r6jA 82 82.68 b.36.1.1 97151 2pt0A 340 82.70 2gdnA 267 82.96 2qv2A 342 84.58 1y8cA 246 84.79 c.66.1.43 116563 2ngrB 234 85.30 a.116.1.1 19105 2ouxA 286 85.76 1w4tA 299 86.29 d.3.1.5 120639 2ctdA 96 86.32 g.37.1.1,g.37.1.1 130792,130793 1f7sA 139 86.93 d.109.1.2 40857 2pp6A 102 86.98 2oxgB 124 89.71