# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2nqwA	93	3.02e-12		
2plsA	86	3.51e-12		
2r2zA	93	4.00e-12		
2pliA	91	6.29e-12		
2p13A	90	7.94e-12		
2o1rA	81	8.75e-12		
2p4pA	86	1.57e-11		
2p3hA	101	6.55e-11		
2rk5A	87	1.48e-10		
2oaiA	94	2.24e-10		
3ddjA	296	0.04015		
1pbwA	216	0.4556	a.116.1.1	19103
2vfrA	422	1.138		
2yvsA	219	1.157		
1w1oA	534	8.431	d.58.32.4,d.145.1.1	109071,109072
1wvfA	520	13.09	d.58.32.1,d.145.1.1	121337,121338
1wviA	257	14.59	c.108.1.14	114915
2qxfA	482	22.34		
2q5wD	77	25.17		
2qv2A	342	25.40		
2ovjA	201	30.57		
1w5rA	278	31.00	d.3.1.5	120643
1tx4A	198	36.03	a.116.1.1	19098
1zkdA	387	37.73	c.66.1.52	125184
1hplA	449	39.93	b.12.1.2,c.69.1.19	23639,34787
3ddyA	186	42.40		
1r6jA	82	46.48	b.36.1.1	97151
1i8dA	213	46.76	b.43.4.3,b.43.4.3	61953,61954
1uj2A	252	46.97	c.37.1.6	99452
1gxyA	226	47.19	d.166.1.3	76380
1t8kA	77	47.90	a.28.1.1	106666
2uuuA	584	48.74		
1ei7A	158	50.59	a.24.5.1	16584
2qnwA	82	53.29		
2giaB	187	53.99	d.18.1.4	135222
1kzlA	208	56.73	b.43.4.3,b.43.4.3	77635,77636
1uf3A	228	57.35	d.159.1.6	99317
1rlmA	271	60.80	c.108.1.10	111860
1xebA	150	63.47	d.108.1.1	115219
2pp6A	102	67.28		
2cx4A	164	67.56	c.47.1.10	130973
2d74B	148	69.00		
2posA	94	70.13		
1q9uA	130	70.31	d.129.7.1	96314
2ehsA	77	70.97		
2ctdA	96	73.04	g.37.1.1,g.37.1.1	130792,130793
2fgsA	179	81.26		
1e5xA	486	82.64	c.79.1.1	59283
1xkpC	143	87.74	d.198.1.1	122088
2ngrB	234	88.77	a.116.1.1	19105
2gcuA	245	89.42		
2mbrA	340	89.50	d.145.1.2,d.146.1.1	41749,41762